PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G475014_P01
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 371aa    MW: 43119.9 Da    PI: 8.6473
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G475014_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM155.32.7e-48912242128
                NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvka...eekewyfFskrdkkyatgkrknratksgyWk 84 
                         pGfrFhPtd elv +yLk+kve+k +++ ++i+e+diyk++PwdLp+      +  +   ++++wyfF+ r +ky+++ r+nr+t sg+Wk
  GRMZM2G475014_P01  91 FPGFRFHPTDLELVGFYLKRKVEKKGFRI-DIIREIDIYKHDPWDLPNearhvvQ--GaggDKDDWYFFCLRGRKYRNSIRPNRVTGSGFWK 179
                        69***************************.99**************964676552..1443556**************************** PP

                NAM  85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        atg dk++++  ++++vglkk+Lv+y+g+a +g+ktdW+mhe+rl
  GRMZM2G475014_P01 180 ATGIDKPIHDGaGERVVGLKKSLVYYRGSAGRGNKTDWMMHEFRL 224
                        *********9867888***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100552.16790246IPR003441NAC domain
SuperFamilySSF1019411.12E-5190246IPR003441NAC domain
PfamPF023652.3E-2492224IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MYCKDDHVKQ LPFSHASKHI NTAVNQVRTS ASIRPHRHGH ACKQQSSPRN LELARHRNQE  60
RTIQAMEDDE EKPSQRITNK EEDEEDDDLV FPGFRFHPTD LELVGFYLKR KVEKKGFRID  120
IIREIDIYKH DPWDLPNEAR HVVQGAGGDK DDWYFFCLRG RKYRNSIRPN RVTGSGFWKA  180
TGIDKPIHDG AGERVVGLKK SLVYYRGSAG RGNKTDWMMH EFRLPSAELV ELHDAGIWTI  240
CRIFKRNTSY TRRCQQQKQE YGSKRSQQQE QELQYYYDYY RYHHHHHQHH YFHSSEAVYA  300
AAEHHRQPSF LLRGFHGSSS SSAETTTTSG FVGAHPLLPP STTSTLGWSD AASLRDSGIS  360
TWDELGRILE I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-449224919168NO APICAL MERISTEM PROTEIN
1ut4_B8e-449224919168NO APICAL MERISTEM PROTEIN
1ut7_A8e-449224919168NO APICAL MERISTEM PROTEIN
1ut7_B8e-449224919168NO APICAL MERISTEM PROTEIN
3swm_A8e-449224922171NAC domain-containing protein 19
3swm_B8e-449224922171NAC domain-containing protein 19
3swm_C8e-449224922171NAC domain-containing protein 19
3swm_D8e-449224922171NAC domain-containing protein 19
3swp_A8e-449224922171NAC domain-containing protein 19
3swp_B8e-449224922171NAC domain-containing protein 19
3swp_C8e-449224922171NAC domain-containing protein 19
3swp_D8e-449224922171NAC domain-containing protein 19
4dul_A8e-449224919168NAC domain-containing protein 19
4dul_B8e-449224919168NAC domain-containing protein 19
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G475014
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G475014_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008662392.20.0protein FEZ
TrEMBLA0A1D6KGR70.0A0A1D6KGR7_MAIZE; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A317YD250.0A0A317YD25_MAIZE; Transcription factor JUNGBRUNNEN 1
STRINGGRMZM2G475014_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.12e-72NAC domain containing protein 42