PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G475014_P01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NAC | ||||||||
Protein Properties | Length: 371aa MW: 43119.9 Da PI: 8.6473 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 155.3 | 2.7e-48 | 91 | 224 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvka...eekewyfFskrdkkyatgkrknratksgyWk 84 pGfrFhPtd elv +yLk+kve+k +++ ++i+e+diyk++PwdLp+ + + ++++wyfF+ r +ky+++ r+nr+t sg+Wk GRMZM2G475014_P01 91 FPGFRFHPTDLELVGFYLKRKVEKKGFRI-DIIREIDIYKHDPWDLPNearhvvQ--GaggDKDDWYFFCLRGRKYRNSIRPNRVTGSGFWK 179 69***************************.99**************964676552..1443556**************************** PP NAM 85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 atg dk++++ ++++vglkk+Lv+y+g+a +g+ktdW+mhe+rl GRMZM2G475014_P01 180 ATGIDKPIHDGaGERVVGLKKSLVYYRGSAGRGNKTDWMMHEFRL 224 *********9867888***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 52.167 | 90 | 246 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.12E-51 | 90 | 246 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-24 | 92 | 224 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MYCKDDHVKQ LPFSHASKHI NTAVNQVRTS ASIRPHRHGH ACKQQSSPRN LELARHRNQE 60 RTIQAMEDDE EKPSQRITNK EEDEEDDDLV FPGFRFHPTD LELVGFYLKR KVEKKGFRID 120 IIREIDIYKH DPWDLPNEAR HVVQGAGGDK DDWYFFCLRG RKYRNSIRPN RVTGSGFWKA 180 TGIDKPIHDG AGERVVGLKK SLVYYRGSAG RGNKTDWMMH EFRLPSAELV ELHDAGIWTI 240 CRIFKRNTSY TRRCQQQKQE YGSKRSQQQE QELQYYYDYY RYHHHHHQHH YFHSSEAVYA 300 AAEHHRQPSF LLRGFHGSSS SSAETTTTSG FVGAHPLLPP STTSTLGWSD AASLRDSGIS 360 TWDELGRILE I |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-44 | 92 | 249 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-44 | 92 | 249 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-44 | 92 | 249 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-44 | 92 | 249 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-44 | 92 | 249 | 22 | 171 | NAC domain-containing protein 19 |
3swm_B | 8e-44 | 92 | 249 | 22 | 171 | NAC domain-containing protein 19 |
3swm_C | 8e-44 | 92 | 249 | 22 | 171 | NAC domain-containing protein 19 |
3swm_D | 8e-44 | 92 | 249 | 22 | 171 | NAC domain-containing protein 19 |
3swp_A | 8e-44 | 92 | 249 | 22 | 171 | NAC domain-containing protein 19 |
3swp_B | 8e-44 | 92 | 249 | 22 | 171 | NAC domain-containing protein 19 |
3swp_C | 8e-44 | 92 | 249 | 22 | 171 | NAC domain-containing protein 19 |
3swp_D | 8e-44 | 92 | 249 | 22 | 171 | NAC domain-containing protein 19 |
4dul_A | 8e-44 | 92 | 249 | 19 | 168 | NAC domain-containing protein 19 |
4dul_B | 8e-44 | 92 | 249 | 19 | 168 | NAC domain-containing protein 19 |
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Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G475014 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G475014_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008662392.2 | 0.0 | protein FEZ | ||||
TrEMBL | A0A1D6KGR7 | 0.0 | A0A1D6KGR7_MAIZE; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A317YD25 | 0.0 | A0A317YD25_MAIZE; Transcription factor JUNGBRUNNEN 1 | ||||
STRING | GRMZM2G475014_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1191 | 38 | 129 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 2e-72 | NAC domain containing protein 42 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G475014_P01 |