PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G474656_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HB-PHD
Protein Properties Length: 693aa    MW: 76786.8 Da    PI: 4.6273
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G474656_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox37.83.3e-125756141352
                        HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
           Homeobox  13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                        + L e+F+ ++yps++ +e LA++lgLt  qV  WF NrR
  GRMZM2G474656_P01 575 QKLHEHFKTQPYPSRSLKESLAEELGLTFHQVNRWFENRR 614
                        789************************************* PP
2PHD44.82.8e-15212267151
                        SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                        +C+ Cg+  ++ +++++lCdg C++ fH++Cl+++l++e++p+g   wlC+ C++k
  GRMZM2G474656_P01 212 FCATCGSknATLGNDIILCDGaCDRGFHQNCLNPPLRTEDIPMGdeGWLCPACDCK 267
                        7******65555********66**********************99*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.93E-13202270IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.104.8E-13209267IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.217210267IPR019787Zinc finger, PHD-finger
PfamPF006281.1E-12212267IPR019787Zinc finger, PHD-finger
CDDcd155045.07E-26212264No hitNo description
SMARTSM002492.1E-11212265IPR001965Zinc finger, PHD-type
PROSITE patternPS013590213264IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.603.6E-14554614IPR009057Homeodomain-like
PROSITE profilePS5007114.333560620IPR001356Homeobox domain
SuperFamilySSF466896.42E-13561615IPR009057Homeodomain-like
SMARTSM003891.4E-12562624IPR001356Homeobox domain
CDDcd000867.01E-12563614No hitNo description
PfamPF000461.3E-9575614IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0009089anatomyendosperm
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MEKKTVHVPA EGNNGEIENG TSSSQNPETL EHPVLLSASQ TVPNNLGIRK NYKRAANRGK  60
KGSEGLTGQA YTLRSSDIDV RVLRSTSGSK TTSTEHVQPP GQPAAKRRKR SRASNKNSTD  120
EFSQIRKRVR YILNRMNYEQ SLIEAYASEG WKNQSLDKTR PEKELERAKS EILRCKLRIR  180
EVFQNIDSLL SKGKIDESLF DSEGEISCED IFCATCGSKN ATLGNDIILC DGACDRGFHQ  240
NCLNPPLRTE DIPMGDEGWL CPACDCKLDC IDLINELQGS DISIEDPWEK VFPEAAAMTN  300
GSKQDEAFDL PSDDSDDNDF DPNMPEEHVA SKEEESSEEE EDDDGGSDSD DSDFLTCSDD  360
LEPLIDKKKV DDLGLPSEDS EDDDYDPAGP DSDKDVEKKS NSDESDFTSD SDDFCKEIKK  420
SGGHDEVSSP PLPDVKVGDM EKNTAQSNTI SSADDPMETE IDQSVVLPVS RRRQAERLDY  480
KRLYDEAYGE ASSDSSDEEE WSGKNTPIKS NEEGEVGSPA GKGSRVAHHN ELTTQNTKES  540
LHSLHGSVDE KHGDLTSNGS NIKDRKGHFG PVISQKLHEH FKTQPYPSRS LKESLAEELG  600
LTFHQVNRWF ENRRHFARLA SSRKGISPDK HSPQNTNSPV TPSMQPKEPE GTVMEESNVC  660
INRDATISKK AVSSKVGSRK NLSKSSPKSR DKS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.821450.0pollen
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G474656
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in kernels, leaves and shoots but not in roots.
Functional Description ? help Back to Top
Source Description
UniProtInteracts with the shrunken (SHR) 26 bp feedback control element.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G474656_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX924280.0X92428.1 Z.mays mRNA for Hox1b protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020394806.10.0HOX1B protein isoform X1
SwissprotP466050.0HOX1A_MAIZE; Homeobox protein HOX1A
TrEMBLA0A1D6MAU90.0A0A1D6MAU9_MAIZE; Homeobox2
STRINGGRMZM2G474656_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43933768
Representative plantOGRP18301539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.12e-83Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Bellmann R,Werr W
    Zmhox1a, the product of a novel maize homeobox gene, interacts with the Shrunken 26 bp feedback control element.
    EMBO J., 1992. 11(9): p. 3367-74
    [PMID:1354614]