PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G472671_P01 | ||||||||
Common Name | bHLH145, LOC100273284 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 254aa MW: 27321.9 Da PI: 5.9714 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.1 | 6.5e-13 | 91 | 136 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RRd++N +f eLr +P+ +++Ka+ L A YI +L GRMZM2G472671_P01 91 SHVEAERQRRDKLNRRFCELRAAVPTV-----SRMDKASLLADAATYIGEL 136 799***********************6.....49**************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.301 | 87 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-16 | 89 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.37E-13 | 90 | 141 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-16 | 91 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.2E-10 | 91 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.2E-12 | 93 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MDELVCPAAS SCSSPSPTSF FAAGHVPELE FVSWDVPEEW MEGTDWFDEP LDGDEGSRSA 60 GNDLSGEPPA PAPKRRRGRK PGPRTNGPTL SHVEAERQRR DKLNRRFCEL RAAVPTVSRM 120 DKASLLADAA TYIGELRDRV EQLEAEAKQA SAAVTTAVAA ASHSFAPLQE KLGLEVRMVA 180 GLDAAALRLT TSAARHAPAH LMLALRSLDL QVQHACVCRV GGVTVQDAIV DVPAGLRDER 240 CLRAALLQRL QPSG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 6e-19 | 90 | 149 | 7 | 66 | Transcription factor MYC2 |
5gnj_B | 6e-19 | 90 | 149 | 7 | 66 | Transcription factor MYC2 |
5gnj_E | 6e-19 | 90 | 149 | 7 | 66 | Transcription factor MYC2 |
5gnj_F | 6e-19 | 90 | 149 | 7 | 66 | Transcription factor MYC2 |
5gnj_G | 6e-19 | 90 | 149 | 7 | 66 | Transcription factor MYC2 |
5gnj_I | 6e-19 | 90 | 149 | 7 | 66 | Transcription factor MYC2 |
5gnj_M | 6e-19 | 90 | 149 | 7 | 66 | Transcription factor MYC2 |
5gnj_N | 6e-19 | 90 | 149 | 7 | 66 | Transcription factor MYC2 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G472671 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G472671_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT040679 | 0.0 | BT040679.1 Zea mays full-length cDNA clone ZM_BFc0116D15 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001141197.1 | 0.0 | uncharacterized protein LOC100273284 | ||||
TrEMBL | A0A317Y4U6 | 0.0 | A0A317Y4U6_MAIZE; Transcription factor MYC2 | ||||
TrEMBL | B4FU91 | 0.0 | B4FU91_MAIZE; BHLH transcription factor | ||||
STRING | GRMZM2G472671_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP893 | 33 | 130 | Representative plant | OGRP17355 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32640.1 | 6e-20 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G472671_P01 |
Entrez Gene | 100273284 |