PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G472100_P01
Common NameLOC103633767, MADS13
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family M-type_MADS
Protein Properties Length: 268aa    MW: 28524.2 Da    PI: 8.6508
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G472100_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.26.8e-21957149
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                       k+ien+  rqv fskRr+g++KKA+ELS+LC+a v  ++fs++g+ y +
  GRMZM2G472100_P01  9 KPIENEEARQVCFSKRRQGLFKKASELSILCGATVGSVVFSTSGRSYSF 57
                       78******************************************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-29160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-26172IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.978161IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-19323IPR002100Transcription factor, MADS-box
CDDcd002658.99E-32370No hitNo description
PfamPF003193.3E-241157IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-193859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020136anatomyear inflorescence
PO:0025142anatomyleaf tip
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MTRKKMEMKP IENEEARQVC FSKRRQGLFK KASELSILCG ATVGSVVFST SGRSYSFGHP  60
SINDVADRFL SSVAPGGLAS GGASASHGGS GTTSGAVTDT VHRLNMEYLE LQQSLDSEKK  120
KKERLQEAAA KEMGGRVMQC LNANVFELGL AELQELQKWL EAVDGAVKEK ANRILAEARA  180
RQTARGPSLV PQPPMEMDIA STSRHLQSGT RHIGADSVAL SFAGPSSSNN GFVGGSPEVH  240
DPLLIVSGGR LQDVCGLGSF PNNQKNHG
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G472100
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G472100_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277150.0KJ727715.1 Zea mays clone pUT5654 MADS transcription factor (MADS13) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008653675.10.0agamous-like MADS-box protein AGL29
TrEMBLA0A060CXH00.0A0A060CXH0_MAIZE; Agamous-like MADS-box protein AGL29 (Fragment)
STRINGGRMZM2G472100_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-23AGAMOUS-like 61