PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G472096_P01
Common NameLOC103633769
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family M-type_MADS
Protein Properties Length: 293aa    MW: 30726.9 Da    PI: 4.1243
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G472096_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.98.1e-16751145
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                       k+ien+  rq+ f+kRr+ ++ KA+ELS+LC+a v  ++fs+ g+
  GRMZM2G472096_P01  7 KPIENEETRQICFTKRRQSLFNKASELSILCGAMVGSVVFSTFGT 51
                       78***************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.2E-18158IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-12121IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.839159IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-19472IPR002100Transcription factor, MADS-box
PfamPF003192.2E-19955IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-122136IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-123657IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MVRGEMKPIE NEETRQICFT KRRQSLFNKA SELSILCGAM VGSVVFSTFG TPFSFGHPSI  60
DDVANRFLSP PPPPPSDAPA ASSGGGAGAG ASGSSSNDGS CSWAVTDTIR RLNSEYAELR  120
QALDSESKKR ETLQEATGKE MGARMMQLLN ANVSELGLAE LLEFLECLEA VDGVVNNETA  180
NKTTTTLDLE ATTTTSGGSS QTRQGLVPQP PMETVVAPAP AAADLQYQLL GGEHSGAADP  240
MAFAAPTTSW SSEFVVDGFE VDDPMHGGGG GGDDLHDVYY ALGDFPGDDQ NHG
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G472096
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G472096_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008653676.10.0agamous-like MADS-box protein AGL29
TrEMBLA0A1D6HW690.0A0A1D6HW69_MAIZE; Agamous-like MADS-box protein AGL29
STRINGGRMZM2G472096_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.12e-18AGAMOUS-like 29