PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G471635_P01 | ||||||||
Common Name | bHLH113, LOC103653294, ZEAMMB73_030191 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 241aa MW: 25987.4 Da PI: 8.5045 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.6 | 1.1e-08 | 168 | 208 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A++Y+k L GRMZM2G471635_P01 168 ARMRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 208 699*****************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.085 | 159 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-12 | 164 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.01E-14 | 164 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-13 | 165 | 214 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.0E-6 | 168 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.79E-6 | 182 | 213 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MDFDMLNSHP EAQLELMKAM LQLEQLTAFP LPDHGAMMMV PSTPPSPGMP QATTHHHYFS 60 SVPHHMSAGA NGRGVYDDDH QYSQGTAAPC NGSARSSEYV AHAQGPVAGG GNSGESTAAT 120 SVGSSSSAMR EMIFRVAALQ PVNIDPEMVR PPKRRNVRIS TDPQSVAARM RRERISERIR 180 ILQRLVPGGT KMDTASMLDE AIHYVKFLKT QVQSLERAAA ASGRRPAAPA VADNGAMNGQ 240 W |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 149 | 154 | RPPKRR |
2 | 168 | 173 | RMRRER |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G471635 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G471635_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ726973 | 0.0 | KJ726973.1 Zea mays clone pUT3674 bHLH transcription factor (bHLH113) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008678454.2 | 1e-176 | transcription factor bHLH69 | ||||
TrEMBL | A0A3L6F3E4 | 1e-177 | A0A3L6F3E4_MAIZE; Transcription factor HEC1 | ||||
TrEMBL | K7UTQ7 | 1e-177 | K7UTQ7_MAIZE; BHLH transcription factor | ||||
STRING | GRMZM2G471635_P01 | 1e-178 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3103 | 36 | 82 | Representative plant | OGRP761 | 15 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67060.1 | 4e-37 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G471635_P01 |
Entrez Gene | 103653294 |