PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G471600_P01
Common NameLOC107548110, ZEAMMB73_914271
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family G2-like
Protein Properties Length: 299aa    MW: 30828.5 Da    PI: 7.4146
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G471600_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.41e-3087140155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        +prl+Wtp+LH+rFv+av+qL G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  GRMZM2G471600_P01  87 RPRLVWTPQLHKRFVDAVAQL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 140
                        59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.00484143IPR017930Myb domain
SuperFamilySSF466891.79E-2084144IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-3186145IPR009057Homeodomain-like
TIGRFAMsTIGR015575.6E-2488140IPR006447Myb domain, plants
PfamPF002494.9E-890139IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MREEEEPSWF ARGEEQEQQL PRPDELMPLT QTLITPDLAV AFDITTHGAG GAGPVPDING  60
GGASSAAGSS GGGGGGGGDE PARTLKRPRL VWTPQLHKRF VDAVAQLGIK NAVPKTIMQL  120
MSVDGLTREN VASHLQKYRL YLKRMQGLGG GGGGGSHSSG SGSATDAATE HLFATGPVPF  180
LPPAHRAPAA DTYPPFSPMG SGAAHHHHRA PQIGHFHHPA ARPLAHYAAA AGPGFDHGFL  240
SRVAPPGMHH HRMASAAAGM GMGMIAPSSF ADEMDRGAGG SGGGGGRREL TLFPTSGDH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A8e-3387143157Transcription factor LUX
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G471600
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, stems, petioles, filaments, stigma, pedicels, sepals, anthers, petals, and siliques. {ECO:0000269|PubMed:20331973}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G471600_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0854480.0BT085448.2 Zea mays full-length cDNA clone ZM_BFc0014E09 mRNA, complete cds.
GenBankBT0858990.0BT085899.2 Zea mays full-length cDNA clone ZM_BFc0078O07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001310197.10.0uncharacterized protein LOC107548110
SwissprotO222107e-51MYBC1_ARATH; Transcription factor MYBC1
TrEMBLK7UVN80.0K7UVN8_MAIZE; Putative MYB DNA-binding domain superfamily protein
STRINGGRMZM2G471600_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162034105
Representative plantOGRP11571753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.16e-54G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]