PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G470422_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 381aa    MW: 40476.9 Da    PI: 4.8116
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G470422_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2232e-07147169123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C+ Cgk F+r  nL+ H+r H
  GRMZM2G470422_P01 147 HSCKVCGKGFKRDANLRMHMRGH 169
                        79*******************98 PP
2zf-C2H211.20.0011261275620
                        TTEEESSHHHHHHHH CS
            zf-C2H2   6 CgksFsrksnLkrHi 20 
                        Cg+sFsrk+ L  H 
  GRMZM2G470422_P01 261 CGTSFSRKDKLFAHV 275
                        **************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.13E-5145172No hitNo description
PROSITE profilePS5015712.321147174IPR007087Zinc finger, C2H2
SMARTSM003550.0017147169IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.3E-6147173IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280149169IPR007087Zinc finger, C2H2
SMARTSM0035527229251IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MEVCSPSDDV MEAQRRQREP TQAGGCSDDP RAVLTCLTFL EQKIAHLRGI ISAAPRPPRQ  60
MVSAELSCIA VQLVSLSKSL AAAGGAADLD DGAARSPAPN DGGDSDSSDH DPFHADADAD  120
DDGRLPPAGS YEVIELGEEE ILAPHVHSCK VCGKGFKRDA NLRMHMRGHG EEYKTAAALA  180
KPAAAAAATA QSSSSSSARC FYSCPFVGCK RNREAGAPQL PAAQDGRSYT CRRCNVKRFS  240
VLADLRTHEK HCGRDRWVCS CGTSFSRKDK LFAHVAAFDG HAPALPPEDD AAAHNVANGG  300
LGTDSYRRLT TMDTEAASLE FFSDTMLDAL SCSDIEGFAL MDGQGQCLDD DGRGSLSPWP  360
VGLDSCDFDG FDLFGAPPID F
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.208640.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G470422
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G470422_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1044873e-65AC104487.3 Oryza sativa chromosome 3 BAC OSJNBa0042I09 genomic sequence, complete sequence.
GenBankAK2876053e-65AK287605.1 Oryza sativa Japonica Group cDNA, clone: J065055P16, full insert sequence.
GenBankAP0149593e-65AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126113e-65CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020400195.10.0zinc finger protein STAR3
TrEMBLA0A1D6LBB40.0A0A1D6LBB4_MAIZE; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
STRINGGRMZM2G470422_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Representative plantOGRP8301663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.35e-55C2H2 family protein