PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G470307_P01 | ||||||||
Common Name | LOC100502241 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 858aa MW: 94240.5 Da PI: 4.9566 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61 | 2.6e-19 | 51 | 97 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde++v+ v+++G++ W++Ia+ ++ gR +kqc++rw+++l GRMZM2G470307_P01 51 KGPWSKEEDEIIVQMVNKYGPKKWSAIAQALP-GRIGKQCRERWHNHL 97 79******************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 47.4 | 4.3e-15 | 103 | 145 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE+ l++a++++G++ W+ + ++ gRt++ +k++w+ GRMZM2G470307_P01 103 KEAWTQEEEITLIHAHRMYGNK-WAELTKFLP-GRTDNAIKNHWN 145 579*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-27 | 41 | 101 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 31.636 | 46 | 101 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.29E-31 | 48 | 144 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.6E-19 | 50 | 99 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.45E-16 | 53 | 97 | No hit | No description |
Pfam | PF13921 | 3.8E-18 | 54 | 114 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-20 | 102 | 152 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.654 | 102 | 152 | IPR017930 | Myb domain |
SMART | SM00717 | 4.4E-14 | 102 | 150 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.81E-11 | 105 | 145 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 858 aa Download sequence Send to blast |
MPSDKAKAPK KKGEEDPGIP PAPCEGEISH EPHRQRSLNG WQKVLNPELV KGPWSKEEDE 60 IIVQMVNKYG PKKWSAIAQA LPGRIGKQCR ERWHNHLNPA INKEAWTQEE EITLIHAHRM 120 YGNKWAELTK FLPGRTDNAI KNHWNSSVKK KVDSYISSGL LSQVPCLSLI ECPAQCDSLS 180 AMDQQNNGGT DCNDQNTSVV LSSDLQVNVD ANKKEAHDSH SSLCQGVCYP STETVGSVLP 240 DDLEMDMDEG SGNSIFADDQ TLCSTSNQEQ SMVPFVVAQE MPVSVLSSVS SAEQKRHLIS 300 DAKSLKSELW KDVCLQTLIT GDTDDPDASS RLNNPDSSKM DTNFLKEAYP LHTPNPSSVI 360 ETVYEPMALV TISPPFICSD GLSFAPENRS KPGEMSDCEA EMVTCSNNFF GNAEQSAKLA 420 SSDDRPEAFT MTESTTNCGG EQLTDAKEPV ASTAKERLSK DIETMPDKKK GEGALFYEPP 480 RFPGLDVPFI SCDLVTSADL QEFSPLGIRQ WMRSTMNVPT PLRLWGSPTH DESPDALKTA 540 AESFPCTSSI MKKRQRSLLS PTPDERIEKK SGIAKGVTDI SYMITATCSM NATNDEDIVT 600 ESAVCAKQPS LKHLDKKLEF SDINKENSDG ASEQAKDAQN TQLVDEQHSS PNVVNPNTDL 660 QDNIQPVQIL VEQSSNNLIS SDHGAKPSCK EVISSKSKPT KLLVEKSSPC INVDYEYVNL 720 LADTPGIKRG LESPSAWKSP WYIDMHMHFQ GFVSPADRTY DALGLVNRLS KHSAAAAVEA 780 CEMLASGNTT SDKENKDNTD GKELVTRKSQ IKIMAEARVL DFDESPAPAR TADKKLGSCH 840 RRSVSSPILP SPNLRSFR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 7e-53 | 41 | 152 | 48 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 7e-53 | 41 | 152 | 48 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Zm.974 | 0.0 | embryo| meristem| ovary| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G470307 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G470307_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT087506 | 0.0 | BT087506.1 Zea mays full-length cDNA clone ZM_BFb0098J09 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001310566.1 | 0.0 | uncharacterized protein LOC100502241 | ||||
Refseq | XP_008673352.1 | 0.0 | uncharacterized protein LOC100502241 isoform X1 | ||||
TrEMBL | A0A1D6MF55 | 0.0 | A0A1D6MF55_MAIZE; Myb-related protein 3R-1 | ||||
STRING | GRMZM2G470307_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2495 | 38 | 79 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G11510.2 | 2e-70 | myb domain protein 3r-4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G470307_P01 |