PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G468479_P01 | ||||||||
Common Name | LOC100217142 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB_related | ||||||||
Protein Properties | Length: 861aa MW: 95878.6 Da PI: 7.901 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.8 | 1.6e-10 | 46 | 84 | 3 | 43 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 +W+++E ++++a +q+G++ Wk+I+ +g g++ +++s GRMZM2G468479_P01 46 KWSKDELTRFYEAYRQHGKD-WKKISIAIG-GKSSDMVRSL 84 8*****************99.*********.*****99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.442 | 42 | 99 | IPR017884 | SANT domain |
SMART | SM00717 | 3.7E-4 | 43 | 91 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.84E-9 | 44 | 89 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.06E-6 | 46 | 83 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-4 | 46 | 86 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-8 | 46 | 83 | IPR001005 | SANT/Myb domain |
Pfam | PF06584 | 2.1E-31 | 485 | 585 | IPR033471 | DIRP domain |
SMART | SM01135 | 1.0E-38 | 485 | 586 | IPR033471 | DIRP domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 861 aa Download sequence Send to blast |
MGPAKGSRTI NKTIVKGYED QQQHDDPSSS SKAKQKKRKI SDLDPKWSKD ELTRFYEAYR 60 QHGKDWKKIS IAIGGKSSDM VRSLYSAHRT FLSLPEHQAT AMGFIALVTG HHNASEKTTS 120 HRGYDHIARA SGKARKHGEQ QKSIDGPDLH NCHEGEITGF SASFKKRYYG ELVRNSRNHA 180 VQRRTPLIPV IAPADRSTID EPTPGIENVI NFNSTKRKYE AANHGCAVAP TNKYSSDRVS 240 GFAETCKADQ DFKKTRIQQT VEESQTGIVE HETTMASKEG NKLVSSVNNN QILIDSISED 300 DMLVLDVLNS LVNAPSKMSE LEINIPSGSL GKTDSVLREE GHPTIDLSKQ GKPVRKSSAS 360 KTRKKKHKKI LGAEVPAEAQ KKCDDNLVLP ETLRVGITDD SSLCTDSGRA RTPEASEDIS 420 AEVPNTQTEA KPEFIMSGRT RLKSQMHCKT KPMSCNEGSD NFQAKKLLHC LSSEPLRRWC 480 TYEWFYSAVD YPWFSNNEFV HYLDHAKLSH LSRLTRSEWS AIRSSLGKPR RFSNHFLAVE 540 KEKLEDYREK VRKIYAQLND GSRDSLPADL ARPFSIGQQV IVRHPSSREL CDGKVVMMGP 600 DCYKVHFDDP DLGVDTVKDT DCMPVNWLHN RPDNMRRNYL SNDVYNILEM DHIPDLTPSE 660 NRNHAINGTT VFEELKSLRL TSDRQPKAES IIHSERPPYR STSDGPTSSS GFSCPDNNAG 720 HNGELESYVA AFFENSLSQA RQMVDEAIQA NSGGSDDEKV CMLNQVTGCL GSDSRGVQLP 780 SDLISNCIAT VISIKRLSDS RHPFGNVAGV LEHALSMLRP SCPQNLGVYT EIKRDLCTIA 840 NQIFALVPTA SGNCSPPVSP M |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.82871 | 0.0 | ear| embryo| endosperm| meristem| ovary| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G468479 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G468479_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT038003 | 0.0 | BT038003.1 Zea mays full-length cDNA clone ZM_BFb0206J23 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001346575.1 | 0.0 | uncharacterized protein LOC100217142 | ||||
TrEMBL | A0A3L6FMZ9 | 0.0 | A0A3L6FMZ9_MAIZE; Protein ALWAYS EARLY 3 | ||||
STRING | GRMZM2G468479_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8696 | 30 | 38 | Representative plant | OGRP12826 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 1e-66 | DNA binding |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G468479_P01 |