PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G468479_P01
Common NameLOC100217142
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 861aa    MW: 95878.6 Da    PI: 7.901
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G468479_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.81.6e-104684343
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43
                       +W+++E  ++++a +q+G++ Wk+I+  +g g++  +++s 
  GRMZM2G468479_P01 46 KWSKDELTRFYEAYRQHGKD-WKKISIAIG-GKSSDMVRSL 84
                       8*****************99.*********.*****99985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.4424299IPR017884SANT domain
SMARTSM007173.7E-44391IPR001005SANT/Myb domain
SuperFamilySSF466892.84E-94489IPR009057Homeodomain-like
CDDcd001676.06E-64683No hitNo description
Gene3DG3DSA:1.10.10.603.3E-44686IPR009057Homeodomain-like
PfamPF002491.1E-84683IPR001005SANT/Myb domain
PfamPF065842.1E-31485585IPR033471DIRP domain
SMARTSM011351.0E-38485586IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 861 aa     Download sequence    Send to blast
MGPAKGSRTI NKTIVKGYED QQQHDDPSSS SKAKQKKRKI SDLDPKWSKD ELTRFYEAYR  60
QHGKDWKKIS IAIGGKSSDM VRSLYSAHRT FLSLPEHQAT AMGFIALVTG HHNASEKTTS  120
HRGYDHIARA SGKARKHGEQ QKSIDGPDLH NCHEGEITGF SASFKKRYYG ELVRNSRNHA  180
VQRRTPLIPV IAPADRSTID EPTPGIENVI NFNSTKRKYE AANHGCAVAP TNKYSSDRVS  240
GFAETCKADQ DFKKTRIQQT VEESQTGIVE HETTMASKEG NKLVSSVNNN QILIDSISED  300
DMLVLDVLNS LVNAPSKMSE LEINIPSGSL GKTDSVLREE GHPTIDLSKQ GKPVRKSSAS  360
KTRKKKHKKI LGAEVPAEAQ KKCDDNLVLP ETLRVGITDD SSLCTDSGRA RTPEASEDIS  420
AEVPNTQTEA KPEFIMSGRT RLKSQMHCKT KPMSCNEGSD NFQAKKLLHC LSSEPLRRWC  480
TYEWFYSAVD YPWFSNNEFV HYLDHAKLSH LSRLTRSEWS AIRSSLGKPR RFSNHFLAVE  540
KEKLEDYREK VRKIYAQLND GSRDSLPADL ARPFSIGQQV IVRHPSSREL CDGKVVMMGP  600
DCYKVHFDDP DLGVDTVKDT DCMPVNWLHN RPDNMRRNYL SNDVYNILEM DHIPDLTPSE  660
NRNHAINGTT VFEELKSLRL TSDRQPKAES IIHSERPPYR STSDGPTSSS GFSCPDNNAG  720
HNGELESYVA AFFENSLSQA RQMVDEAIQA NSGGSDDEKV CMLNQVTGCL GSDSRGVQLP  780
SDLISNCIAT VISIKRLSDS RHPFGNVAGV LEHALSMLRP SCPQNLGVYT EIKRDLCTIA  840
NQIFALVPTA SGNCSPPVSP M
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.828710.0ear| embryo| endosperm| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G468479
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G468479_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0380030.0BT038003.1 Zea mays full-length cDNA clone ZM_BFb0206J23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001346575.10.0uncharacterized protein LOC100217142
TrEMBLA0A3L6FMZ90.0A0A3L6FMZ9_MAIZE; Protein ALWAYS EARLY 3
STRINGGRMZM2G468479_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86963038
Representative plantOGRP1282645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.21e-66DNA binding