PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G465835_P01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NAC | ||||||||
Protein Properties | Length: 272aa MW: 30229.6 Da PI: 7.1793 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 131.3 | 7e-41 | 5 | 141 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk..........kvkaeekewyfFskrdkkyatgkrknratksgy 82 +pGfrF Pt+eel+++yL++k++g++ ++e+vi+ +d+++++PwdL + +++++e+ w++F++r++++a+g r++r+t sgy GRMZM2G465835_P01 5 APGFRFYPTEEELICFYLRNKLSGTRrADIERVIPVADVCTLDPWDLISgtfirqahrgACSGNEEPWFYFCPRQEREARGGRPSRTTPSGY 96 69*********************9987888889**************74578887776645557889************************* PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 Wka g+ v++++g+ +g+kkt+vfy+grap g kt+W ++ey+ GRMZM2G465835_P01 97 WKAAGTPGLVYAADGRPIGTKKTMVFYRGRAPAGAKTKWKLNEYK 141 ********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-44 | 3 | 176 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 44.605 | 4 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-22 | 6 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MAEFAPGFRF YPTEEELICF YLRNKLSGTR RADIERVIPV ADVCTLDPWD LISGTFIRQA 60 HRGACSGNEE PWFYFCPRQE REARGGRPSR TTPSGYWKAA GTPGLVYAAD GRPIGTKKTM 120 VFYRGRAPAG AKTKWKLNEY KAFEDDDATA AVAAPAPPSH ALQTWSQYSL CRLYTKSGCL 180 RQFDRRRSST AAATGGGNEN KPPAPSTALP DGDQTGQKRK RAAPTDDTSS SYEDGDEDVS 240 TQQRLRLAQR GADDEGVKDM TDWWSEFLDD CI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-28 | 6 | 176 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-28 | 6 | 176 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-28 | 6 | 176 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-28 | 6 | 176 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 5e-28 | 6 | 176 | 19 | 165 | NAC domain-containing protein 19 |
4dul_B | 5e-28 | 6 | 176 | 19 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G465835 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G465835_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021303937.1 | 1e-134 | NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 1e-59 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A1D6M532 | 0.0 | A0A1D6M532_MAIZE; Putative NAC domain transcription factor superfamily protein | ||||
STRING | GRMZM2G465835_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 | Representative plant | OGRP2278 | 11 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 3e-59 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G465835_P01 |
Publications ? help Back to Top | |||
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