PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G465595_P01 | ||||||||
Common Name | LOC103633308, Zm.126628 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C2H2 | ||||||||
Protein Properties | Length: 452aa MW: 47207.5 Da PI: 10.2264 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21.2 | 7.7e-07 | 78 | 100 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cg+ F r nL+ H r+H GRMZM2G465595_P01 78 YVCEICGQGFQREQNLQMHRRRH 100 9*********************9 PP | |||||||
2 | zf-C2H2 | 10.7 | 0.0017 | 183 | 205 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C k + +s++k H++t+ GRMZM2G465595_P01 183 WVCARCAKGYAVQSDYKAHLKTC 205 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.85E-7 | 77 | 100 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.5E-5 | 77 | 100 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.759 | 78 | 100 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 6.5E-4 | 78 | 100 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 80 | 100 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 110 | 147 | 177 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 4.85E-7 | 178 | 203 | No hit | No description |
SMART | SM00355 | 270 | 183 | 210 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 452 aa Download sequence Send to blast |
MALLVKSHHQ MLVSSSTSSS SPSASQQRQP PPPPPSSSCL TEQQPSPAKR KRRPPGTPDP 60 DAEVVALSPR TLLESDRYVC EICGQGFQRE QNLQMHRRRH KVPWRLVKRA PPPPAAAAGG 120 GGGAADANNS SGTGGGAGGG APRKRVFVCP EPSCLHHDPA HALGDLVGIK KHFRRKHGGR 180 RQWVCARCAK GYAVQSDYKA HLKTCGTRGH SCDCGRVFSR VESFIEHQDA CNSSRMRGEA 240 VVVAVPVPVP PPSALPVIRP AVPRHPPTVA VAPPPPPVLQ LLPASAAASA PRTSSATTTA 300 SPSTTTTASH HQAKPHAATT TKLQLSIGPI VTAAAAAAVD CGEDESEAEE LRRAVEEKAA 360 ADAARERARG EAAAAERALD EARRARQRAR ADLEKACALR DHAARLLGQV TCHACRHRSL 420 AVAVVRGAAE GHAAGPAVAC DSIRGGGLGA GI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 6e-17 | 179 | 233 | 3 | 57 | Zinc finger protein JACKDAW |
5b3h_F | 6e-17 | 179 | 233 | 3 | 57 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G465595 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G465595_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT087165 | 0.0 | BT087165.2 Zea mays full-length cDNA clone ZM_BFb0183A11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008653253.2 | 0.0 | protein indeterminate-domain 16 | ||||
TrEMBL | A0A1D6JVG3 | 0.0 | A0A1D6JVG3_MAIZE; Protein SHOOT GRAVITROPISM 5 | ||||
TrEMBL | A0A317Y4Z4 | 0.0 | A0A317Y4Z4_MAIZE; Protein SHOOT GRAVITROPISM 5 | ||||
STRING | GRMZM2G465595_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1051 | 38 | 124 | Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01940.1 | 4e-86 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G465595_P01 |
Entrez Gene | 103633308 |