PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G465091_P01 | ||||||||
Common Name | TCP14, ZEAMMB73_610384 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | TCP | ||||||||
Protein Properties | Length: 207aa MW: 21010.9 Da PI: 10.5997 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 109.4 | 5.2e-34 | 45 | 149 | 9 | 89 |
TCP 9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.seceaesssssasnsssg........... 88 +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a +c+++ s s+as +g GRMZM2G465091_P01 45 KDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAvFSCSSAPSTSAAS---AGagagvslpllg 133 89*******************************************************9999944552222222222...2222344555555 PP TCP 89 ...............k 89 + GRMZM2G465091_P01 134 krpreehepavavavA 149 5544444455555441 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 27.009 | 44 | 98 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 7.2E-30 | 44 | 122 | IPR005333 | Transcription factor, TCP |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MASRDGATFQ VYRAMPAPTP MSLASAAPAA ADAAAPKKAG AGAGKDRHSK VNGRGRRVRM 60 PIVCAARVFQ LTRELGLKSD GQTIEWLLRQ AEPSILAATG SGTTPAVFSC SSAPSTSAAS 120 AGAGAGVSLP LLGKRPREEH EPAVAVAVAP APFWATLQAR PVAAAWGLSP AQEAAAQAYA 180 SVAAQGHHLN LLSVLSGAAR PSEEESR |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G465091 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G465091_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727696 | 0.0 | KJ727696.1 Zea mays clone pUT5635 TCP transcription factor (TCP14) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008663394.3 | 1e-142 | transcription factor PCF1 | ||||
Swissprot | Q9FMX2 | 5e-39 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | K7TM60 | 1e-142 | K7TM60_MAIZE; TCP transcription factor | ||||
STRING | GRMZM2G465091_P01 | 1e-143 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1941 | 33 | 100 | Representative plant | OGRP922 | 14 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 9e-35 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G465091_P01 |