PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G464580_P01
Common NameLOC103636520
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 346aa    MW: 38544.9 Da    PI: 7.3402
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G464580_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00021220238119
                        EEETTTTEEESSHHHHHHH CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrH 19 
                        y+Cp Cg++F++   L  H
  GRMZM2G464580_P01 220 YECPVCGRTFRSYQALGGH 238
                        99********998777555 PP
2zf-C2H211.60.00088282304123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C +C ++Fs+  +L  H r+H
  GRMZM2G464580_P01 282 FECRICFRVFSSGQSLGGHKRSH 304
                        89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.7E-51436IPR007087Zinc finger, C2H2
SMARTSM003550.61436IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.5561441IPR007087Zinc finger, C2H2
SuperFamilySSF576671.3E-71436No hitNo description
PROSITE patternPS0002801636IPR007087Zinc finger, C2H2
SuperFamilySSF576671.3E-7215239No hitNo description
PfamPF139126.9E-12219244IPR007087Zinc finger, C2H2
SMARTSM0035518220240IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.974220247IPR007087Zinc finger, C2H2
PfamPF139121.6E-9282305IPR007087Zinc finger, C2H2
SMARTSM003550.54282304IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.242282305IPR007087Zinc finger, C2H2
PROSITE patternPS000280284304IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006340anatomyadult vascular leaf
PO:0009025anatomyvascular leaf
PO:0020142anatomystem internode
PO:0025142anatomyleaf tip
PO:0001052developmental stagevascular leaf expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MWDVAVLASS ATRHSCKVCR KGFPCGRSLG GHMRSHSLAD ELDDEEEHQQ RQGLDCATAP  60
GAGGHGLRDK PKKTRRLSSL SDCGGRGDVF SPCESNVDYR RARGGGKAME LERDWKQEGL  120
MPPPRRRRSM RVPARTPPPT AFDKEPEDVA LSLIMLSCDI VDRRGCSTAV GAKYSPGEDS  180
TRRDYQYEYH HHDADSNDGT KINKRKLHHS DVGDEKRGRY ECPVCGRTFR SYQALGGHRA  240
SYKRINSNCS IAKPILDYQP EPKPSVETNT TSMVSNNRTI KFECRICFRV FSSGQSLGGH  300
KRSHSIAGEL YEHVHSVDDD DVGDDEQPLI SDEFLDLNLP APGVED
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G464580
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G464580_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008657089.10.0zinc finger protein ZAT4
TrEMBLA0A1D6K5Y30.0A0A1D6K5Y3_MAIZE; C2H2-like zinc finger protein
STRINGGRMZM2G464580_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38613573
Representative plantOGRP1266344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.19e-22C2H2-like zinc finger protein