PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G464037_P01
Common NameGATA30, LOC103655789, ZEAMMB73_269215
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GATA
Protein Properties Length: 472aa    MW: 49212 Da    PI: 8.9821
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G464037_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.35.6e-20258292135
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        Cs+C+++kTp+WR+gpdg +tLCnaCGl+y++++l
  GRMZM2G464037_P01 258 CSHCQSSKTPQWREGPDGRRTLCNACGLRYKSHRL 292
                        *********************************96 PP
2GATA61.51e-19402436135
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        Cs+C++++Tp+WR+gpdg +tLCnaCGl+yr+++l
  GRMZM2G464037_P01 402 CSHCQSSETPQWREGPDGRRTLCNACGLRYRSHRL 436
                        *********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.56252290IPR000679Zinc finger, GATA-type
SMARTSM004019.3E-18252302IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.66E-14254302No hitNo description
Gene3DG3DSA:3.30.50.102.1E-16256292IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.10E-14257291No hitNo description
PfamPF003205.6E-18258292IPR000679Zinc finger, GATA-type
PROSITE patternPS003440258283IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.376396434IPR000679Zinc finger, GATA-type
SMARTSM004011.6E-19396450IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.8E-14398459No hitNo description
Gene3DG3DSA:3.30.50.105.9E-16400436IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.33E-17401457No hitNo description
PfamPF003208.2E-18402436IPR000679Zinc finger, GATA-type
PROSITE patternPS003440402427IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MSNQPPHASL QDDLPDCDGD DPLALAIRLF PAHTTGAGLS PAALGIGRVA EPPRREQEPL  60
ANSTYGVRGA GPDPWGLRLS RSVLGGLDGF DVDTFFADDA LDGGGEATEG DSPPAHVTAA  120
ARGSLANDDA SPLPAAMPAV ALEAYDACSA PVPAACGGAP PVLVANNSMP PASCLGARGA  180
LYIVSKRTRT HAPPPLAAES MTPAVAPPPA MPDGGNGGNN RSAALPVALA PPSGSTGGAV  240
RRRRPVPRPR NREVQRTCSH CQSSKTPQWR EGPDGRRTLC NACGLRYKSH RLVPEYRAAE  300
SMTPRDLHPN AGLVGASSGP SSRPSSSSTT TPSQSQIDFP SHALPAVAPP PAMPDPDGGN  360
GGNNRSAALP VALAPPSGST GGAVRRRRPV PCPRNRQVQR TCSHCQSSET PQWREGPDGR  420
RTLCNACGLR YRSHRLLPEY RPTTSPSFQI GQHSNRHRRI MQIREQNGTA GS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241248RRRPVPRP
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G464037
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G464037_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282710.0KJ728271.1 Zea mays clone pUT6548 C2C2-GATA transcription factor (GATA30) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008680705.10.0rho GTPase-activating protein 17
TrEMBLK7V2650.0K7V265_MAIZE; C2C2-GATA transcription factor
STRINGGRMZM2G464037_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127772434
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.14e-26GATA transcription factor 4