PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G463730_P02
Common NameLOC103644106, Zm.9110
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family FAR1
Protein Properties Length: 1202aa    MW: 135849 Da    PI: 6.4912
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G463730_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR175.61e-23436522190
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                        +fY +YA+++GFsvrk    k+ +n  +++r +vCskeg+r ++ +   ++++++ e rtgC+a++++k + + k++vt+++ +HnH+l 
  GRMZM2G463730_P02 436 EFYANYAETAGFSVRKGWLDKTAKNV-TKSRAYVCSKEGFRPRSASI--ESKKPSLEARTGCQAHMTIKITASTKYVVTEFVADHNHDLE 522
                        6********************95555.99************999877..999************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS511529.31312372IPR001289Nuclear transcription factor Y subunit A
PfamPF031014.2E-21436522IPR004330FAR1 DNA binding domain
PfamPF105511.5E-20622713IPR018289MULE transposase domain
PfamPF044341.1E-4888932IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.693888935IPR007527Zinc finger, SWIM-type
SMARTSM005755.8E-4910937IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 1202 aa     Download sequence    Send to blast
MVDRAAARAQ AVSSDPPPPA LLEPDPRLSQ PGAADGQEVA SAGATAGPPS LPQASDAEED  60
ALASPAGQPG ERCRAMMEVV AKDGAWKVTK LVVEHCHELQ VAPGHVAVTV PALGMEFDSV  120
DDAKGFYYGY GEQVGFKARM GSNRRSVGDG EKILQRFLCW KGNYANRSRC KDSDAGKETD  180
EVLEGLSAAA GKRKREPYKT RSRNPGRSTE VIEVEKGVGL GGAGNGLELD NGRRSRRGRS  240
KKAEVEHGED SVVGFEAEEV AKAVSDADEE EDEGDEDQEA AEQEVEVEVK EQRARGRPRK  300
AVMEDNALQA RVLRELGVRA LQYNNEERKK ILNKYRSKRQ SRSVSSRPTK ISSRQALAER  360
RKRGNGGRFL SSEEQPLPSE RRSKRLKKQN LKMQKAESKE DETMEAEPDP EIDVVPGPGG  420
EPKVGMVFLN EDKAYEFYAN YAETAGFSVR KGWLDKTAKN VTKSRAYVCS KEGFRPRSAS  480
IESKKPSLEA RTGCQAHMTI KITASTKYVV TEFVADHNHD LETPLVDIQI LKSEKLLAKV  540
QQPPDPPKVV LIPNEYKNYT RTKRTKNMQL GDTQAICEYL QRMKGENPSF FYAIQVDEDD  600
MFTNVFWADA KSIMDYNYFG DVVCVDTRYC TSDYGRPLLL FTGVNHHNQL IIFGSALIYD  660
DSAQSFRWLF ETFKSAMSGK QPKTVLTDQS AALSDAVSSW PGTIHRFSLL HLYLNATKIS  720
RDTLQGLETF ASDFSRWLYE YEEDNFYSSW EILSEKYNIK DNEWFCKLYE DRERWALPYG  780
RDTFCADIAT TLRRDNTNTI LTDLIKPEID LQNFFNNYDK FLEEKRLAEQ QADYLGAQIT  840
QRVAPLHLLW QAANLYTPTL FEMFRMEYEQ ISKCVVYSCG EIGPISEYQV TVKDRPQGQF  900
VRFDSTECMV VCSCKKFEFM GLLCCHVLKI LDLRNIKELP RHYILKRWRK DAQSESPENY  960
GFAAIDEDPK FSLSKRYNAL YRNLYKIAAK ASESVEAYAF LENQYEQLVE QVEVLLQAKL  1020
HDKSSLSTVL KGNQPNMLNS EVNSSEHRRA TGKKIKNVEV RRQQQSLDPN KKKKGRQVLL  1080
EPEIEIPLRV EPPTVSNDIQ NHLRTTNQFL APSHMMQAPY VAQQFGLGSL QGFPGMSPFG  1140
QIQEPTPLQQ PHLQPPSFHS GPQITQAPPP DIQSLQFLSS NPQLGHQTTD QGQYTIPVWD  1200
FL
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G463730
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G463730_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008665517.10.0protein FAR1-RELATED SEQUENCE 4 isoform X1
TrEMBLA0A1D6L6J80.0A0A1D6L6J8_MAIZE; Protein FAR1-RELATED SEQUENCE 5
STRINGGRMZM2G463730_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP1390844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-95FAR1-related sequence 5