PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G463730_P01

Common Name

Zm.9110

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

FAR1

Protein Properties

Length: 1198aa MW: 135289 Da PI: 6.7667

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G463730_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.6	1e-23	436	522	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YA+++GFsvrk k+ +n +++r +vCskeg+r ++ + ++++++ e rtgC+a++++k + + k++vt+++ +HnH+l GRMZM2G463730_P01 436 EFYANYAETAGFSVRKGWLDKTAKNV-TKSRAYVCSKEGFRPRSASI--ESKKPSLEARTGCQAHMTIKITASTKYVVTEFVADHNHDLE 522 6******************95555.99********999877..999**********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51152	9.31	312	372	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF03101	4.1E-21	436	522	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.5E-20	622	713	IPR018289	MULE transposase domain
Pfam	PF04434	1.1E-4	888	932	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.693	888	935	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.8E-4	910	937	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1198 aa Download sequence Send to blast
MVDRAAARAQ AVSSDPPPPA LLEPDPRLSQ PGAADGQEVA SAGATAGPPS LPQASDAEED 60 ALASPAGQPG ERCRAMMEVV AKDGAWKVTK LVVEHCHELQ VAPGHVAVTV PALGMEFDSV 120 DDAKGFYYGY GEQVGFKARM GSNRRSVGDG EKILQRFLCW KGNYANRSRC KDSDAGKETD 180 EVLEGLSAAA GKRKREPYKT RSRNPGRSTE VIEVEKGVGL GGAGNGLELD NGRRSRRGRS 240 KKAEVEHGED SVVGFEAEEV AKAVSDADEE EDEGDEDQEA AEQEVEVEVK EQRARGRPRK 300 AVMEDNALQA RVLRELGVRA LQYNNEERKK ILNKYRSKRQ SRSVSSRPTK ISSRQALAER 360 RKRGNGGRFL SSEEQPLPSE RRSKRLKKQN LKMQKAESKE DETMEAEPDP EIDVVPGPGG 420 EPKVGMVFLN EDKAYEFYAN YAETAGFSVR KGWLDKTAKN VTKSRAYVCS KEGFRPRSAS 480 IESKKPSLEA RTGCQAHMTI KITASTKYVV TEFVADHNHD LETPLVDIQI LKSEKLLAKV 540 QQPPDPPKVV LIPNEYKNYT RTKRTKNMQL GDTQAICEYL QRMKGENPSF FYAIQVDEDD 600 MFTNVFWADA KSIMDYNYFG DVVCVDTRYC TSDYGRPLLL FTGVNHHNQL IIFGSALIYD 660 DSAQSFRWLF ETFKSAMSGK QPKTVLTDQS AALSDAVSSW PGTIHRFSLL HLYLNATKIS 720 RDTLQGLETF ASDFSRWLYE YEEDNFYSSW EILSEKYNIK DNEWFCKLYE DRERWALPYG 780 RDTFCADIAT TLRRDNTNTI LTDLIKPEID LQNFFNNYDK FLEEKRLAEQ QADYLGAQIT 840 QRVAPLHLLW QAANLYTPTL FEMFRMEYEQ ISKCVVYSCG EIGPISEYQV TVKDRPQGQF 900 VRFDSTECMV VCSCKKFEFM GLLCCHVLKI LDLRNIKELP RHYILKRWRK DAQSESPENY 960 GFAAIDEDPK FSLSKRYNAL YRNLYKIAAK ASESVEAYAF LENQYEQLVE QVEVLLQAKL 1020 HDKSSLSTVL KGNQPNMLNS EVNSSEHRRA TGKKIKNVEV RRQQQSLDPN KKKKGRQVLL 1080 EPEIEIPLRV EPPTVSNDIQ NHLRTTNQFL APSHMMQAPY VAQQFGLGSL QGFPGMSPFG 1140 QIQEPTPLQQ PHLQPPSFHS GPQITQQSSA WPPDHGSRPV HHSSLGFPVT YSILLFGC

Sequence ? help Back to Top

Protein Sequence Length: 1198 aa Download sequence Send to blast

MVDRAAARAQ AVSSDPPPPA LLEPDPRLSQ PGAADGQEVA SAGATAGPPS LPQASDAEED  60
ALASPAGQPG ERCRAMMEVV AKDGAWKVTK LVVEHCHELQ VAPGHVAVTV PALGMEFDSV  120
DDAKGFYYGY GEQVGFKARM GSNRRSVGDG EKILQRFLCW KGNYANRSRC KDSDAGKETD  180
EVLEGLSAAA GKRKREPYKT RSRNPGRSTE VIEVEKGVGL GGAGNGLELD NGRRSRRGRS  240
KKAEVEHGED SVVGFEAEEV AKAVSDADEE EDEGDEDQEA AEQEVEVEVK EQRARGRPRK  300
AVMEDNALQA RVLRELGVRA LQYNNEERKK ILNKYRSKRQ SRSVSSRPTK ISSRQALAER  360
RKRGNGGRFL SSEEQPLPSE RRSKRLKKQN LKMQKAESKE DETMEAEPDP EIDVVPGPGG  420
EPKVGMVFLN EDKAYEFYAN YAETAGFSVR KGWLDKTAKN VTKSRAYVCS KEGFRPRSAS  480
IESKKPSLEA RTGCQAHMTI KITASTKYVV TEFVADHNHD LETPLVDIQI LKSEKLLAKV  540
QQPPDPPKVV LIPNEYKNYT RTKRTKNMQL GDTQAICEYL QRMKGENPSF FYAIQVDEDD  600
MFTNVFWADA KSIMDYNYFG DVVCVDTRYC TSDYGRPLLL FTGVNHHNQL IIFGSALIYD  660
DSAQSFRWLF ETFKSAMSGK QPKTVLTDQS AALSDAVSSW PGTIHRFSLL HLYLNATKIS  720
RDTLQGLETF ASDFSRWLYE YEEDNFYSSW EILSEKYNIK DNEWFCKLYE DRERWALPYG  780
RDTFCADIAT TLRRDNTNTI LTDLIKPEID LQNFFNNYDK FLEEKRLAEQ QADYLGAQIT  840
QRVAPLHLLW QAANLYTPTL FEMFRMEYEQ ISKCVVYSCG EIGPISEYQV TVKDRPQGQF  900
VRFDSTECMV VCSCKKFEFM GLLCCHVLKI LDLRNIKELP RHYILKRWRK DAQSESPENY  960
GFAAIDEDPK FSLSKRYNAL YRNLYKIAAK ASESVEAYAF LENQYEQLVE QVEVLLQAKL  1020
HDKSSLSTVL KGNQPNMLNS EVNSSEHRRA TGKKIKNVEV RRQQQSLDPN KKKKGRQVLL  1080
EPEIEIPLRV EPPTVSNDIQ NHLRTTNQFL APSHMMQAPY VAQQFGLGSL QGFPGMSPFG  1140
QIQEPTPLQQ PHLQPPSFHS GPQITQQSSA WPPDHGSRPV HHSSLGFPVT YSILLFGC

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G463730

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G463730_P01

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008665517.1	0.0	protein FAR1-RELATED SEQUENCE 4 isoform X1
TrEMBL	A0A1D6L6J8	0.0	A0A1D6L6J8_MAIZE; Protein FAR1-RELATED SEQUENCE 5
STRING	GRMZM2G463730_P02	0.0	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-95	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	GRMZM2G463730_P01