PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G463525_P01 | ||||||||
Common Name | Zm.30240 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | Dof | ||||||||
Protein Properties | Length: 618aa MW: 67070.9 Da PI: 8.8988 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.5 | 5.9e-38 | 243 | 302 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCy+nny+++qPr+fC++C+ryWt+GG++rnvPvG+grr+nk GRMZM2G463525_P01 243 PDKILPCPRCNSMETKFCYFNNYNVNQPRHFCRNCKRYWTAGGTMRNVPVGSGRRRNKDP 302 7899*****************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-30 | 240 | 300 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.5E-31 | 245 | 301 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.649 | 247 | 301 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 249 | 285 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 618 aa Download sequence Send to blast |
MAAPGGLDQD CAQDAAIKLF GRSIPVLHSS VFAATAAAAS ECLYGNFLPI RVSSTSHSPY 60 LRPYLWGDLC WFIPYPDSNH KDTLPLSVEK SLRIFLFSWG LILLDISALA YFYSRTNNLL 120 KSKSTSSNNL SCVAWNANHV THWVVLVSTK LSNDVRSNDG MPCLPNMSLI VKTNPFPSKS 180 NMKNGLQAIS SQHGKMEADS NSEEAKNSLQ AIISQPGKRY DSKSEEAKTE SGGSGQEKVL 240 KKPDKILPCP RCNSMETKFC YFNNYNVNQP RHFCRNCKRY WTAGGTMRNV PVGSGRRRNK 300 DPSHHHHFTK VCDYTIATNG DVSDATQRQS VAAKPCLLQG SGKQNETACK SVSPVSNIKE 360 QNNADLISLV SGDNKEEKSC ASSAVVSGSS ENWMPENTVK KEEDNTSAYG NGVKVPDHKM 420 QPHHAGPVSV FSRNPAAVMA TNQCSEDGIH TPGNGTVSPL SLPPLPMVPT PGICAPAVPF 480 PFPLVPAFVS CIPGWPSGLW GAPWPGSSAP TLLSLPPNGL ALSGSNSGVL GKHTRVANLQ 540 EEQKAEKKFW VPKALRIDNP EEAAKSSIWA SLGIKPDDRI IFKSFQSKDL KNSATKTPES 600 LQANPAAFSR SQTFQERA |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.30240 | 0.0 | meristem| ovary| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G463525 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G463525_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT084638 | 0.0 | BT084638.2 Zea mays full-length cDNA clone ZM_BFb0150D22 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008673918.1 | 0.0 | cyclic dof factor 2 | ||||
TrEMBL | A0A1D6MQV2 | 0.0 | A0A1D6MQV2_MAIZE; Cyclic dof factor 2 | ||||
STRING | GRMZM2G463525_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1434 | 38 | 116 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 3e-40 | cycling DOF factor 2 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G463525_P01 |