PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G463133_P01 | ||||||||
Common Name | ZEAMMB73_114445 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 413aa MW: 43369.5 Da PI: 5.5286 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.6 | 3e-10 | 246 | 290 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h Er+RR+++N +f++Lr+llP++ +K +K ++L A Y+ L GRMZM2G463133_P01 246 HMLSERKRREKLNGSFHTLRSLLPPC-----PKKDKTTVLMNAASYVMAL 290 6678*********************9.....7999*********999877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.57E-16 | 239 | 307 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.005 | 241 | 290 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.9E-8 | 246 | 290 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.3E-15 | 246 | 306 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.89E-10 | 246 | 295 | No hit | No description |
SMART | SM00353 | 3.3E-11 | 247 | 296 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 413 aa Download sequence Send to blast |
MDEVWRGLDL QLQAGDIDGL HPVSDPFWPA LAECSASFLA AVDDTACFGI ANMDLTAASA 60 DAAAGKSDGV DTSAFFAHND HRGALPMRQD EQQPVYSSSS LSSTRSLSID SGGSSSTFFP 120 LDYDAVAALP AATFSPAPLQ LQQDPFAGDE EAMMLAMLAV ISSAASTSPS SSESSSPLHR 180 AAAAVQPRLH PHGGDDSASH VTVRSTSLAV APERTTSAAD AAGQQDDACK AAAAAAGSNN 240 SSQVYHMLSE RKRREKLNGS FHTLRSLLPP CPKKDKTTVL MNAASYVMAL EAQVSELEDK 300 NSKLQRYVPC GDGGGGGGAT TATAAHRRAR VHISRAASDE QQVSLMVMVM VECDIVDLVL 360 HVLERLRWTS GVSVLSVNAD TYSPQALLKA LANIKLHIMD TATAGTRRCS ARP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 249 | 254 | ERKRRE |
2 | 250 | 255 | RKRREK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.137577 | 1e-165 | meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G463133 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G463133_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT054416 | 1e-162 | BT054416.1 Zea mays full-length cDNA clone ZM_BFc0045O17 mRNA, complete cds. | |||
GenBank | KJ728018 | 1e-162 | KJ728018.1 Zea mays clone pUT6154 bHLH transcription factor (bHLH94) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008656612.1 | 0.0 | putative transcription factor bHLH041 isoform X1 | ||||
TrEMBL | A0A1D6FXZ1 | 0.0 | A0A1D6FXZ1_MAIZE; Putative HLH DNA-binding domain superfamily protein | ||||
STRING | GRMZM2G463133_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10174 | 31 | 36 | Representative plant | OGRP12009 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56960.1 | 3e-19 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G463133_P01 |