PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G462417_P01
Common NameZEAMMB73_926861
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ZF-HD
Protein Properties Length: 655aa    MW: 71591.1 Da    PI: 8.8378
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G462417_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer89.23.9e-281062259
        ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
                       + v+Y+eC++NhAas+GghavDGC+Efm+s g    a+++ CaACgCHR+FHRre++ 
  GRMZM2G462417_P01 10 KVVQYRECQRNHAASIGGHAVDGCREFMAS-G----AEGTACAACGCHRSFHRREPSA 62
                       5799*************************9.4....45899**************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-81059IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047707.6E-251260IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.0E-211359IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.6591459IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS513755.492184214IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.737215249IPR002885Pentatricopeptide repeat
PfamPF130418.1E-8215251IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.1E-8217250IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.4E-5226245IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513757.213285315IPR002885Pentatricopeptide repeat
PfamPF015350.0018290316IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.67316346IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007568.8E-4321349IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.4E-5344378IPR011990Tetratricopeptide-like helical domain
PfamPF130412.9E-11346394IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.641347381IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.9E-7349382IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.133382416IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.224417447IPR002885Pentatricopeptide repeat
PfamPF130418.5E-13447496IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.101448482IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007567.6E-7450484IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.46483518IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.8E-4485518IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.015519553IPR002885Pentatricopeptide repeat
PfamPF015350.054522547IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.4E-5549607IPR011990Tetratricopeptide-like helical domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MAARSKDAKK VVQYRECQRN HAASIGGHAV DGCREFMASG AEGTACAACG CHRSFHRREP  60
SAQQTKRRIR FRKRGPEPMN VHMQQQHHLR QLRAVLLRRG HPVPPPPATH PDPDRAFLAA  120
IRAAASSAPR LVLAACACLR RAGLPAPGPR ALPALLRSAA RCEGAGAYVA ATHALAVRTG  180
ALDDGFVGTA LAGAYAACGC VRDTRKVFDG MAVRDVVSWG VMLDSYCQTR NYKEALLLFA  240
KMKNSGVVPD QLILATVLPA CGHIRHLRIG KAIHSYMLVS DMIIGAHISS ALISLYASCA  300
NMEMAEKLYN EMPRKDLVSS TAMVSGYARN RKVEIARSIF DGMPEKDVVS WSAMISGYVD  360
SNQPNEALSL FNGMQECGIR SDEITMLSVI SACANLGSLD KAKWIHAFIK NSGLNKVLHI  420
CNALIDMFAK CGGINLALNV FNEMPLKNVI TWTSMISAFA MHGDGKSSLR LFEQMKDEGA  480
EPNEVTFLSL LYACCHAGLV HEGRLLFSSM VQQYGIEPKH EHYGCMVDLL GRAKLMQEAV  540
SLIESMHLEP NVPIWGSLLA ACWMHGDLKL GAFAAKKILQ LDPNHDGASV LLLKIYMKSD  600
NLNNAQEVRG VMKLHRVSKE TGLSWMELNE PFHEFAAGGE KHPESGKIFL QKVVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D2e-6214754617338PLS9-PPR
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1626622e-39endosperm
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G462417
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G462417_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008679372.10.0pentatricopeptide repeat-containing protein At4g14820
RefseqXP_008679373.10.0pentatricopeptide repeat-containing protein At4g14820
RefseqXP_008679374.10.0pentatricopeptide repeat-containing protein At4g14820
RefseqXP_008679375.10.0pentatricopeptide repeat-containing protein At4g14820
TrEMBLA0A1D6QGV40.0A0A1D6QGV4_MAIZE; Pentatricopeptide repeat-containing protein
STRINGGRMZM2G462417_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64100.23e-21pentatricopeptide (PPR) repeat-containing protein