PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G460869_P01
Common NameLOC103650014
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 283aa    MW: 31930.7 Da    PI: 7.1209
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G460869_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.6e-1656101147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg W   Ede+l+++v+q+G+++W+ I++++  gR++k+c++rw + 
  GRMZM2G460869_P01  56 RGHWRSFEDEKLKELVAQYGPKNWSHISKKLE-GRSGKSCRLRWINQ 101
                        7899999*************************.***********985 PP
2Myb_DNA-binding47.63.9e-15110152347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         ++  E+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+  
  GRMZM2G460869_P01 110 TFSMVEEERLLVAHHAYGTK-WSLIARLFP-GRTDNAVKNHWHVM 152
                        57788***************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.90851106IPR017930Myb domain
SMARTSM007177.0E-1355104IPR001005SANT/Myb domain
SuperFamilySSF466899.73E-2756153IPR009057Homeodomain-like
PfamPF002492.0E-1456101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2257109IPR009057Homeodomain-like
CDDcd001671.46E-1363100No hitNo description
SMARTSM007177.4E-11107155IPR001005SANT/Myb domain
PROSITE profilePS5129416.288107157IPR017930Myb domain
PfamPF002491.6E-12110151IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-17110156IPR009057Homeodomain-like
CDDcd001672.84E-9115153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0008018anatomytransition vascular leaf
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0020040anatomyleaf base
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0025142anatomyleaf tip
PO:0025541anatomybundle sheath cell
PO:0025589anatomyleaf lamina tip
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDHFSPALPP THDLVPFQEE NKHIFITEEA YDGHVEEHDG SNSHDGISNQ GKHIVRGHWR  60
SFEDEKLKEL VAQYGPKNWS HISKKLEGRS GKSCRLRWIN QLDPHLNHDT FSMVEEERLL  120
VAHHAYGTKW SLIARLFPGR TDNAVKNHWH VMMARKSRAI QGIKMMSSSN PSPSAKESPH  180
FMPTININQN YGKNMHSQLD AQVEVATTPH IYHAIEFKNS LSTNTTNLSI EGASNMDPHV  240
KTPMQSNFIA ITHSGFSTPS LATEKSGDKF TSPFFDFLGV GDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28541565107B-MYB
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G460869
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G460869_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D6MQP40.0A0A1D6MQP4_MAIZE; Myb domain protein 110
STRINGGRMZM2G460869_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-52myb domain protein 105