PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G460544_P02 | ||||||||
Common Name | ZEAMMB73_644654, Zm.11846 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | SBP | ||||||||
Protein Properties | Length: 261aa MW: 27254.4 Da PI: 10.1146 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.1 | 1.6e-40 | 87 | 162 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +C v+gC+adl++ak+y+ rhkvCe+hsk p v+v+gle rfCqqCsrfh+l efD++k+sCr+rLa+hnerrr++ GRMZM2G460544_P02 87 RCLVDGCNADLTDAKTYYCRHKVCEMHSKEPRVVVNGLELRFCQQCSRFHNLAEFDQQKKSCRKRLAGHNERRRRP 162 6*************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.1E-34 | 84 | 149 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.111 | 85 | 162 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.29E-38 | 86 | 165 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.6E-32 | 88 | 161 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MEAGGASGGD DGDGQLHGLK FGKKIYFEDA GGSSSSGGSG SASATAPPAT QQPSPPAASP 60 RAAPGGGRRG RAAAGGAGPS LPPAPPRCLV DGCNADLTDA KTYYCRHKVC EMHSKEPRVV 120 VNGLELRFCQ QCSRFHNLAE FDQQKKSCRK RLAGHNERRR RPPPGPLASR YGRLAAPLGE 180 PGGRFRSFML DFSYPRVPSA MRDGFPAVRP GGERVPGSNI QWQAASLDPP PPHHQSAAAG 240 YGAHSYGSPG SSSSSRPPVF P |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 8e-30 | 88 | 161 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.11846 | 0.0 | meristem| ovary| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G460544 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269|PubMed:16861571}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G460544_P02 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT054334 | 0.0 | BT054334.1 Zea mays full-length cDNA clone ZM_BFb0338P09 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008679549.1 | 0.0 | squamosa promoter-binding-like protein 14 isoform X1 | ||||
Swissprot | Q7EXZ2 | 1e-68 | SPL14_ORYSJ; Squamosa promoter-binding-like protein 14 | ||||
TrEMBL | A0A3L6EYS7 | 1e-122 | A0A3L6EYS7_MAIZE; Squamosa promoter-binding-like protein 14 | ||||
STRING | GRMZM2G460544_P01 | 1e-119 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42200.1 | 1e-38 | squamosa promoter binding protein-like 9 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G460544_P02 |