PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G459614_P01
Common NameLOC103653354, ZEAMMB73_161546
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 282aa    MW: 29863.1 Da    PI: 7.4464
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G459614_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.0003895117123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC++C + F ++  L  H++ H
  GRMZM2G459614_P01  95 FKCNYCLRKFYTSQALGGHQNAH 117
                        89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.1E-692123No hitNo description
PROSITE profilePS5015711.21995122IPR007087Zinc finger, C2H2
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MYMDKGSSSR TASMEVEGMG VQQVEDGEEE VQAPRKEEAS PAKELDLLGA LGSDQPPEVE  60
AVAPRKEKEK AMVAEPEDDK SPATAPGGAE KKRTFKCNYC LRKFYTSQAL GGHQNAHKRE  120
RSLAKQRGAA VAAAAGRGLY GGADPFPPPH HLRFQHAWPY SAGGSRPSSF PGFGRGSAAA  180
PFYGMHHWWA AHAHAHTQPS MAGLTRRTGA DDRTVYAPHG YGSSSKAPAP AVLDSGLSGL  240
RWSGAAVDSG AAASGDPGVA QHEAPTQHEE AKSCKIDLDL RL
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G459614
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G459614_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008678504.10.0zinc finger protein GIS
TrEMBLA0A1D6Q0390.0A0A1D6Q039_MAIZE; Zinc finger protein 2
STRINGGRMZM2G459614_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130642230
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.14e-15zinc finger protein 4