PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G459540_P01 | ||||||||
Common Name | LOC103645108 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C2H2 | ||||||||
Protein Properties | Length: 257aa MW: 26926.7 Da PI: 10.3247 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.5 | 1.1e-05 | 85 | 104 | 2 | 21 |
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C+ Cgk+Fs++ L H+r GRMZM2G459540_P01 85 PCSECGKRFSSWKALFGHMR 104 5******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101447 | 5.49E-5 | 23 | 28 | No hit | No description |
PROSITE profile | PS50157 | 10.097 | 84 | 111 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.004 | 84 | 106 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.1E-5 | 85 | 109 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 86 | 106 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 8.8E-9 | 86 | 108 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.5E-5 | 86 | 106 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 3.1E-5 | 175 | 200 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 39 | 175 | 198 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF101447 | 5.49E-5 | 197 | 203 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MATPIRPAAA APPAPARPPQ PMPPPPPPHH DTTLTLSLAL PPPPPPSPFA RARGVAPRPA 60 PRPPDVVVAR PAAVRSSPPA GGTPPCSECG KRFSSWKALF GHMRCHPERQ WRGMTPPPHF 120 WHQFTVQERE TATSLLMLRG DRPAGAAGSR GRKSTLGAAG TSASSSLPRC ECDDHKCSVC 180 VRGGFATGRA LGGHKRCHWE KTEGAPPAVA TCSGDGFSAS SSQAAPATTL DLNLPLLPRK 240 SDQDGSLDAT LDLKLGF |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.92965 | 2e-43 | pollen |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G459540 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G459540_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU975188 | 6e-41 | EU975188.1 Zea mays clone 483820 nucleic acid binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008666450.1 | 0.0 | zinc finger protein ZAT3 | ||||
TrEMBL | A0A1D6KHZ4 | 1e-179 | A0A1D6KHZ4_MAIZE; Zinc finger protein ZAT3 | ||||
STRING | GRMZM2G459540_P01 | 1e-180 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11612 | 21 | 30 | Representative plant | OGRP131 | 15 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35280.1 | 7e-25 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G459540_P01 |
Entrez Gene | 103645108 |