PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G458728_P03
Common NameLOC103654617, ZEAMMB73_236071, Zm.24766
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TALE
Protein Properties Length: 671aa    MW: 69914.6 Da    PI: 6.514
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G458728_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.92e-093784151954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  GRMZM2G458728_P03 378 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 415
                        664459******************************88 PP
2BELL116.99.7e-38239310172
               BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                        erqe+q+kk+kLl++l+eV++rY+qy+ q+q+v ssFea+ag gsa+ Yt+lAl++iSr+FrcL+daia+q+
  GRMZM2G458728_P03 239 ERQEMQMKKSKLLNMLDEVEQRYRQYHGQMQAVSSSFEAAAGAGSARTYTALALRTISRQFRCLRDAIASQV 310
                        79********************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.1E-58159308IPR006563POX domain
PfamPF075267.3E-49164307IPR006563POX domain
PROSITE profilePS5007111.969356419IPR001356Homeobox domain
SMARTSM003891.2E-9359423IPR001356Homeobox domain
CDDcd000863.67E-13359420No hitNo description
SuperFamilySSF466893.98E-17361425IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.8E-29362425IPR009057Homeodomain-like
PfamPF059202.6E-18376415IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MAAYYHGGAG TDIQASTDGL QTLYLMNPSY AGGYADDGGA STPGAANMML LNSAVTTMTP  60
ASFAHHHQQQ SPPAAQQHFV GIPLQVQAPP PSGYNLWTPA MAGGAADMSP QAQAQTPGAA  120
GAAGVSAVLS LSSREAPPVT VAAVAACTDE GKYLGVSATP QGQMVMSSKY LKAAQELLDE  180
VVSVSKGVED AKTAAAAATK SLAAVKKKED SEGASGGGTD DGAGAKSGGG AAPEMSTAER  240
QEMQMKKSKL LNMLDEVEQR YRQYHGQMQA VSSSFEAAAG AGSARTYTAL ALRTISRQFR  300
CLRDAIASQV RAASRALGED ADAAVAGGRT VGSRLRYIDH QLRQQRALQQ LGMMQGGAWR  360
PQRGLPERSV SILRAWLFEH FLHPYPKDSD KIMLAKQTGL TRSQVSNWFI NARVRLWKPM  420
VEEMYLEETK DQDAGGGGND EGKSGGGGSK SSDTVDGVMP RADVMSKSAV RVGGGGAGAE  480
SASTNKGIHG SSLLELGGGD HQQSHAGFYD DDEDDGDDVM GRRLKKARGN EPAPAFHHVH  540
DIATLHAQAA AAARQQHEEV SHRELLMKFM ESGGGGGVRD HHQDGGGYSL FAPGPYGQFT  600
TEPFAFAGNG GVSLTLGLPH GAGGSAEQTA SFLMGSTTAG DSGSHGAATS YDMNMQSTKS  660
FAAQLMRDFV A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A3e-17365423563Homeobox protein Meis2
4xrm_B3e-17365423563Homeobox protein Meis2
5bng_A2e-17365423159Homeobox protein Meis2
5bng_B2e-17365423159Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.247660.0aerial organ| embryo| endosperm| meristem| ovary| sheath
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G458728
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G458728_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0860920.0BT086092.2 Zea mays full-length cDNA clone ZM_BFc0115J14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001344816.10.0BEL1-like homeodomain protein 1
RefseqXP_008679683.10.0BEL1-like homeodomain protein 1 isoform X1
RefseqXP_008679685.10.0BEL1-like homeodomain protein 1 isoform X1
RefseqXP_020408426.10.0BEL1-like homeodomain protein 1 isoform X1
SwissprotQ9SJ561e-110BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLK7UPH80.0K7UPH8_MAIZE; Putative POX domain/homeobox DNA-binding domain family protein
STRINGGRMZM2G458728_P040.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.32e-78BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]