PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G458437_P01
Common NameEREB183, LOC103647925
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 296aa    MW: 32160 Da    PI: 7.0624
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G458437_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.56.7e-1862110355
                AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        + GVr+++ +gr++AeIrdp++   + r++lg+f+ta+eAa a+++a+++++g
  GRMZM2G458437_P01  62 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAALSMKG 110
                        56******.**********965...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.4E-2961124IPR001471AP2/ERF domain
CDDcd000181.37E-2661117No hitNo description
PROSITE profilePS5103220.54761118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-2862118IPR001471AP2/ERF domain
PRINTSPR003679.9E-86273IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-2062119IPR016177DNA-binding domain
PfamPF008472.5E-1164110IPR001471AP2/ERF domain
PRINTSPR003679.9E-884100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MMNSRGSGSS SSNHQTMMAF SEHPNPATAS SSGQPQASPP SSPSERPPSG RGRRRAQEPG  60
RFLGVRRRPW GRYAAEIRDP TTKERHWLGT FDTAQEAALA YDRAALSMKG AQARTNFVYT  120
HAAYNNYPPF LVPFHQQQQQ YGAAPQHIGS YGHGHHHYDQ QQQQGSTTGE CSSTMPPVPV  180
ERADGTLLLD RGGGHHHHHH HHRELLFATA DDSSGYLSSV VPESCLRPRS SAAAVEDLRR  240
YSVSDADSYG MGLREDVDDL AQMVAGFWGA GAGDGDGMVA SSQGSDGYSP FSFLSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1852117571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.133830.0ear
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G458437
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed at the time of rudimentary glumes differentiation in a half-ring domain at the base of the rudimentary glume primordium.
Functional Description ? help Back to Top
Source Description
UniProtRequired to prevent the formation of axillary meristems within the spikelet meristem and permit the subsequent establishment of floral meristem identity (PubMed:12835399, PubMed:14503923). Mediates the transition from spikelet to floret meristem (PubMed:14503923). Determines the transition from panicle branching to spikelet formation. May specify floral organ identity by regulating the class B genes (Agamous-like genes) MADS6 and MADS17, as well as class E genes MADS1, MADS7 and MADS8 in floral meristem (PubMed:26744119). Possesses transactivation activity (PubMed:12835399). {ECO:0000269|PubMed:12835399, ECO:0000269|PubMed:14503923, ECO:0000269|PubMed:26744119}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G458437_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278720.0KJ727872.1 Zea mays clone pUT5965 AP2-EREBP transcription factor (EREB183) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008670643.10.0ethylene-responsive transcription factor FZP
SwissprotQ8H3Q16e-93FZP_ORYSJ; Ethylene-responsive transcription factor FZP
TrEMBLA0A060D6V00.0A0A060D6V0_MAIZE; AP2-EREBP transcription factor (Fragment)
STRINGGRMZM2G458437_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105252838
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.19e-38ERF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu QH,Hoque MS,Dennis ES,Upadhyaya NM
    Ds tagging of BRANCHED FLORETLESS 1 (BFL1) that mediates the transition from spikelet to floret meristem in rice (Oryza sativa L).
    BMC Plant Biol., 2003. 3: p. 6
    [PMID:14503923]
  3. Liu HQ, et al.
    [Towards the positional cloning of a spikelet identity gene frizzle panicle (FZP) in rice (Oryza sativa L.)].
    Yi Chuan Xue Bao, 2003. 30(9): p. 811-6
    [PMID:14577371]
  4. Jang S, et al.
    The OsFOR1 gene encodes a polygalacturonase-inhibiting protein (PGIP) that regulates floral organ number in rice.
    Plant Mol. Biol., 2003. 53(3): p. 357-69
    [PMID:14750524]
  5. Rossini L, et al.
    Candidate genes for barley mutants involved in plant architecture: an in silico approach.
    Theor. Appl. Genet., 2006. 112(6): p. 1073-85
    [PMID:16501940]
  6. Yi G, et al.
    Morphological and molecular characterization of a new frizzy panicle mutant, "fzp-9(t)", in rice (Oryza sativa L.).
    Hereditas, 2005. 142(2005): p. 92-7
    [PMID:16970618]
  7. Duan Y, et al.
    Genetic analysis and mapping of gene fzp(t) controlling spikelet differentiation in rice.
    Sci. China, C, Life Sci., 2003. 46(3): p. 328-34
    [PMID:18763148]
  8. Routledge AP, et al.
    Magnaporthe grisea interactions with the model grass Brachypodium distachyon closely resemble those with rice (Oryza sativa).
    Mol. Plant Pathol., 2004. 5(4): p. 253-65
    [PMID:20565594]
  9. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  10. Derbyshire P,Byrne ME
    MORE SPIKELETS1 is required for spikelet fate in the inflorescence of Brachypodium.
    Plant Physiol., 2013. 161(3): p. 1291-302
    [PMID:23355632]
  11. Poursarebani N, et al.
    The Genetic Basis of Composite Spike Form in Barley and 'Miracle-Wheat'.
    Genetics, 2015. 201(1): p. 155-65
    [PMID:26156223]
  12. Bai X, et al.
    Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.
    Sci Rep, 2016. 6: p. 19022
    [PMID:26744119]
  13. Ma X, et al.
    Genomic structure analysis of a set of Oryza nivara introgression lines and identification of yield-associated QTLs using whole-genome resequencing.
    Sci Rep, 2016. 6: p. 27425
    [PMID:27251022]