PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G458437_P01 | ||||||||
Common Name | EREB183, LOC103647925 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 296aa MW: 32160 Da PI: 7.0624 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.5 | 6.7e-18 | 62 | 110 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrdp++ + r++lg+f+ta+eAa a+++a+++++g GRMZM2G458437_P01 62 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAALSMKG 110 56******.**********965...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.4E-29 | 61 | 124 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.37E-26 | 61 | 117 | No hit | No description |
PROSITE profile | PS51032 | 20.547 | 61 | 118 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-28 | 62 | 118 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.9E-8 | 62 | 73 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.32E-20 | 62 | 119 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.5E-11 | 64 | 110 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.9E-8 | 84 | 100 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MMNSRGSGSS SSNHQTMMAF SEHPNPATAS SSGQPQASPP SSPSERPPSG RGRRRAQEPG 60 RFLGVRRRPW GRYAAEIRDP TTKERHWLGT FDTAQEAALA YDRAALSMKG AQARTNFVYT 120 HAAYNNYPPF LVPFHQQQQQ YGAAPQHIGS YGHGHHHYDQ QQQQGSTTGE CSSTMPPVPV 180 ERADGTLLLD RGGGHHHHHH HHRELLFATA DDSSGYLSSV VPESCLRPRS SAAAVEDLRR 240 YSVSDADSYG MGLREDVDDL AQMVAGFWGA GAGDGDGMVA SSQGSDGYSP FSFLSH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-18 | 52 | 117 | 5 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.13383 | 0.0 | ear |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G458437 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed at the time of rudimentary glumes differentiation in a half-ring domain at the base of the rudimentary glume primordium. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required to prevent the formation of axillary meristems within the spikelet meristem and permit the subsequent establishment of floral meristem identity (PubMed:12835399, PubMed:14503923). Mediates the transition from spikelet to floret meristem (PubMed:14503923). Determines the transition from panicle branching to spikelet formation. May specify floral organ identity by regulating the class B genes (Agamous-like genes) MADS6 and MADS17, as well as class E genes MADS1, MADS7 and MADS8 in floral meristem (PubMed:26744119). Possesses transactivation activity (PubMed:12835399). {ECO:0000269|PubMed:12835399, ECO:0000269|PubMed:14503923, ECO:0000269|PubMed:26744119}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G458437_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727872 | 0.0 | KJ727872.1 Zea mays clone pUT5965 AP2-EREBP transcription factor (EREB183) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008670643.1 | 0.0 | ethylene-responsive transcription factor FZP | ||||
Swissprot | Q8H3Q1 | 6e-93 | FZP_ORYSJ; Ethylene-responsive transcription factor FZP | ||||
TrEMBL | A0A060D6V0 | 0.0 | A0A060D6V0_MAIZE; AP2-EREBP transcription factor (Fragment) | ||||
STRING | GRMZM2G458437_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10525 | 28 | 38 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18560.1 | 9e-38 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G458437_P01 |
Entrez Gene | 103647925 |