PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G456568_P01
Common NameLOC103630378, Zm.2490
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 452aa    MW: 50480.3 Da    PI: 4.1803
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G456568_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.14.3e-5061331128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        lppGfrFhPtd e+v++yLk+k+ gkkl + ++i+evd+yk+ PwdLp+  ++++++ ew+fF++rdkky++g+r+nrat +gyWk++gkd+
  GRMZM2G456568_P01   6 LPPGFRFHPTDVEIVSYYLKRKIMGKKLIV-DAISEVDLYKFPPWDLPEksSLRSKDLEWFFFCPRDKKYPNGSRTNRATPNGYWKTSGKDR 96 
                        79*************************988.89**************95235556777********************************** PP

                NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++  ++++vg+kktL+f++g+ pkg +tdWvm ey++
  GRMZM2G456568_P01  97 IIML-NSRTVGMKKTLIFHEGKPPKGDRTDWVMYEYKM 133
                        ****.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-613156IPR003441NAC domain
PROSITE profilePS5100557.0286156IPR003441NAC domain
PfamPF023655.5E-267132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MAQTSLPPGF RFHPTDVEIV SYYLKRKIMG KKLIVDAISE VDLYKFPPWD LPEKSSLRSK  60
DLEWFFFCPR DKKYPNGSRT NRATPNGYWK TSGKDRIIML NSRTVGMKKT LIFHEGKPPK  120
GDRTDWVMYE YKMEDEYLVS TGFSKDTYVL CKIFKKSGLG PRIGEQYGAP FDEAEWDNAE  180
AETSIFPLMT SSEVVNPTEG PHTQPVAPAG ALQEPLHNSS ATCVVEGSPF DHATANTCAE  240
GVTFGYTVAS SAIEDMPAQL SGDGVVSMNN ISSEVNDMYS PHDCDEFLLE EMSRFLNDSP  300
MRNTPYGECS GLPPMSEAEA HAFEVNSFDL YKELSGLVEL GGMDNNFNTS NVETTDYLVL  360
PPDRELSTDG YMELNDLLAS DSSFPIPSEF PAQDNQSMQY PLAEYNVHYD VATLSGPLEP  420
TMPSIFDDFP PNNGPHVTDE EDDYLDPTIP FP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-52215711169Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1221950.0tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G456568
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the epidermal cells of the root apical region. {ECO:0000269|PubMed:20388856}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00583DAPTransfer from AT5G64060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G456568_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008649658.10.0NAC domain-containing protein 82
SwissprotQ9FY821e-80NAC82_ARATH; NAC domain-containing protein 82
TrEMBLA0A096TWC00.0A0A096TWC0_MAIZE; Putative NAC domain transcription factor superfamily protein isoform 1
STRINGGRMZM2G456568_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47313664
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.13e-83NAC domain containing protein 103
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]