PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G456452_P01 | ||||||||
Common Name | DOF13, LOC100277177 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | Dof | ||||||||
Protein Properties | Length: 249aa MW: 24921.8 Da PI: 9.4785 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 102.4 | 2.7e-32 | 78 | 132 | 5 | 59 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 ++cprC s+ntkfCyynnys +qPry+CkaCrr+Wt+GG+lr+vPvGggr++++ GRMZM2G456452_P01 78 PRQCPRCRSANTKFCYYNNYSREQPRYLCKACRRHWTEGGTLRDVPVGGGRKNRR 132 679**********************************************987665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50884 | 25.928 | 79 | 133 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 6.3E-30 | 79 | 131 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 81 | 117 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 1.0E-16 | 86 | 124 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MPSSFLTSSS SSASSHLSYL IPARAAPPPP FAMGQGYGAT SGGGVANATS AAAAPPPPRQ 60 GASRNAGAGH PPLPRPPPRQ CPRCRSANTK FCYYNNYSRE QPRYLCKACR RHWTEGGTLR 120 DVPVGGGRKN RRGAKGGAAA KGSASAAAAA PAQQGGNVLG ADTFPGDLLR QLVQFQPDAA 180 VGGGGYAIDL SAWHQMVAAT APPPPPPGTG GDVSSLGLGA AGAGAGAEAN CVALQYWSED 240 GMPGLDGAC |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.122696 | 0.0 | root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G456452 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G456452_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727985 | 0.0 | KJ727985.1 Zea mays clone pUT6101 C2C2-DOF transcription factor (DOF13) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008671066.1 | 1e-176 | uncharacterized protein LOC100277177 isoform X1 | ||||
Refseq | XP_008671079.1 | 1e-176 | uncharacterized protein LOC100277177 isoform X1 | ||||
Refseq | XP_023157574.1 | 1e-176 | uncharacterized protein LOC100277177 isoform X1 | ||||
Refseq | XP_023157575.1 | 1e-176 | uncharacterized protein LOC100277177 isoform X1 | ||||
TrEMBL | A0A060CY74 | 1e-175 | A0A060CY74_MAIZE; C2C2-DOF transcription factor (Fragment) | ||||
STRING | GRMZM2G456452_P01 | 1e-176 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00940.1 | 6e-18 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G456452_P01 |
Entrez Gene | 100277177 |
Publications ? help Back to Top | |||
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