PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G455889_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 493aa    MW: 53567.5 Da    PI: 10.3398
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G455889_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00081378400123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ykC+ C k+F++   L  H  +H
  GRMZM2G455889_P01 378 YKCSVCQKVFTSYQALGGHKTRH 400
                        9***********99999998887 PP
2zf-C2H211.60.00087424446123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C+ C+++Fs+   L  H+ +H
  GRMZM2G455889_P01 424 HQCSLCPRTFSSGQALGGHMTRH 446
                        79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.6E-48299IPR007087Zinc finger, C2H2
SuperFamilySSF576671.9E-5124198No hitNo description
PROSITE profilePS501579.556126153IPR007087Zinc finger, C2H2
PfamPF139123.1E-12126150IPR007087Zinc finger, C2H2
SMARTSM003550.21126148IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280128148IPR007087Zinc finger, C2H2
PfamPF139121.0E-10176200IPR007087Zinc finger, C2H2
SMARTSM003550.091176198IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.138176203IPR007087Zinc finger, C2H2
PROSITE patternPS000280178198IPR007087Zinc finger, C2H2
PfamPF139129.8E-12378402IPR007087Zinc finger, C2H2
SMARTSM003550.007378400IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.806378405IPR007087Zinc finger, C2H2
SuperFamilySSF576673.46E-9378446No hitNo description
PROSITE patternPS000280380400IPR007087Zinc finger, C2H2
PfamPF139126.0E-10424448IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.18424451IPR007087Zinc finger, C2H2
SMARTSM003550.023424446IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280426446IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MRVRASPSVH APCVGGRQRR VALGKLQMSR WRTARRARHF GGDAQARRTS TDEQRDSPAA  60
RNVRVTISTF SFTIGAFLGW AKVYASYQTL GGHKTSHRKL PLPPAATPRD EALSGGTAHA  120
KEEKLHQCSL CHRTFPSGQA LGGHKTSHWK PPPAAPKDEA EASSGGTAHA KEEKLHQCSL  180
CHRTFPSGQA LGGHKRLHYE KDKDKDAAKD QRGHRGCGGD SRGAGFRPQR LNLPAEAEGA  240
PPDAKRACTD DSAAMIAVLR NFDWPSVRRR MPSSRHARAM LRVVWSGLRL PRYRPPQQPR  300
ESLHIPTCRV LISRVSNNQR LSMALIKPPA ATDDDQAERE YMASCLIMLS RGLRDDNAAD  360
ATRATGAAPT SANMANEYKC SVCQKVFTSY QALGGHKTRH RKPPAAAAPS DEASTGGTAH  420
EKLHQCSLCP RTFSSGQALG GHMTRHRKPP PPVVVLDFDL NMLPAEAEAE ATEPVAAPPD  480
VKRACTDDDA AGD
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G455889
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G455889_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D6F0421e-161A0A1D6F042_MAIZE; Zinc finger protein AZF1
STRINGGRMZM2G455889_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100282335
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-18C2H2-like zinc finger protein