PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G454022_P01
Common NameLOC100381500, ZEAMMB73_494520
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 485aa    MW: 51257.9 Da    PI: 7.666
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G454022_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.30.000163694051455
                        HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  GRMZM2G454022_P01 369 EKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 405
                        677899********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.607355404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.79E-5367409No hitNo description
SuperFamilySSF474591.44E-10367417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-9369413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009084anatomypericarp
PO:0020040anatomyleaf base
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MMAASSSSSN LSDHLAQDDL LPWPSSSSSS LPFAPAAPHH SAIIGGNSQQ PLALNCADRH  60
HSDELEVLLS AQGSHHHQSH SHRHSHPASP VIPPQLSSSL LTMQDLGFQW SNCGGGFLDT  120
SPSTPPTNGQ LQHDGHDDDK IEAEGTLITN SSRPSCAGTA TIAASCHDVV LHGGGGGGTV  180
LPTINISLTT TTTTHTQAQQ QQRPFLAAPP PLPGDAFEIL LASSRLCKTL LLSQAAASSS  240
SSSVLLHDDG TISTVPSLRS ESEHVAYGYG GGPPPPAPAA AHRPRGRRPS VDNYKQQMGA  300
AACAAGAGRQ WSAEHGGRAA ACEERAAAAP ARRPVVVPWK KPRLEQRSGS GSGSGSSTTI  360
LPSFEVRKEK LGDRIAALQQ LVSPFGKTDT ASVLMEAIGY IKFLQDQVET LSRPYLKSSR  420
SSKKPRPTHQ RGCWNASAAG EEQEQEETTT RRRRPDLRSR GLCLVPLSCT SYVTNENGAW  480
VPSQF
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G454022
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G454022_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0614200.0BT061420.1 Zea mays full-length cDNA clone ZM_BFb0144H18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001167802.10.0uncharacterized protein LOC100381500
TrEMBLC0HGG40.0C0HGG4_MAIZE; Uncharacterized protein
STRINGGRMZM2G454022_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72403242
Representative plantOGRP1021979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.12e-29bHLH family protein