PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G453001_P02 | ||||||||
Common Name | LOC103631747, Zm.126322 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | STAT | ||||||||
Protein Properties | Length: 502aa MW: 54890.9 Da PI: 5.6791 | ||||||||
Description | STAT family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | STAT | 189.1 | 5.1e-59 | 228 | 348 | 1 | 121 |
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveks.ddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipk 91 l+vvl+na+g+pv kd+evv+sL+yad+g+vv+ks dd+e+pLLi+++G+e+++ +rpl+++rGra+fklkisqLsskcdn+Lfrikf++++ GRMZM2G453001_P02 228 LEVVLTNAFGEPV-KDKEVVSSLVYADDGTVVAKSrDDSEPPLLITCEGLEYAAISRPLPIIRGRALFKLKISQLSSKCDNKLFRIKFSTLH 318 79**********9.*********************9******************************************************** PP STAT 92 lkkypfleavskpirCisrsrntrsssltk 121 +++y+flea+skpirCisrsr++r+++ tk GRMZM2G453001_P02 319 MQRYSFLEAYSKPIRCISRSRTVRPLGPTK 348 ************************998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF49899 | 1.58E-5 | 33 | 163 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 502 aa Download sequence Send to blast |
MAAPESECGG SDGYRDLRGV RVDLDTGAAR AGGGGGFAVS FWLYLSVSAR PSSVILHQIT 60 AGDDTKLPFL ALGEGNKLLL FPLMRLHREA PAPASSYPWT DTTNLSSTSV CPLEKWFHIG 120 CEVTENVMRL HVDGFLTAEA PLCSLFDEPD SQDDSNQISL VGNDGKLEGY IYNIEVSYVL 180 GAIKEQYTKN PPFKLSIDYS CSDGIEEGDD GIWSIVGGKA SCRRNFILEV VLTNAFGEPV 240 KDKEVVSSLV YADDGTVVAK SRDDSEPPLL ITCEGLEYAA ISRPLPIIRG RALFKLKISQ 300 LSSKCDNKLF RIKFSTLHMQ RYSFLEAYSK PIRCISRSRT VRPLGPTKRA SSATANEIDM 360 LSNGQGFVST DKVNSRGHSV CLHTPMFPKI EDGMVEVVEA HKIVSQNKNA RKVVVSKEAQ 420 NVIGTDSSTS NYDSFDSGSS WSGSEGDDGI ETFSDAVVFR YCLDSTYDRS KFLRGASLTV 480 NKDDLVKLAD RVSLYSGCSH HR |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G453001 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G453001_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008651236.1 | 0.0 | SH2 domain-containing protein B isoform X2 | ||||
TrEMBL | A0A1D6JPB8 | 0.0 | A0A1D6JPB8_MAIZE; SH2 domain protein B | ||||
TrEMBL | A0A317YAD5 | 0.0 | A0A317YAD5_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G453001_P01 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78540.1 | 6e-84 | SH2 domain protein B |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G453001_P02 |
Entrez Gene | 103631747 |