PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G453001_P01 | ||||||||
Common Name | LOC103631747, Zm.126322 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | STAT | ||||||||
Protein Properties | Length: 704aa MW: 77841 Da PI: 5.9424 | ||||||||
Description | STAT family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | STAT | 188.3 | 8.9e-59 | 228 | 348 | 1 | 121 |
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveks.ddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipk 91 l+vvl+na+g+pv kd+evv+sL+yad+g+vv+ks dd+e+pLLi+++G+e+++ +rpl+++rGra+fklkisqLsskcdn+Lfrikf++++ GRMZM2G453001_P01 228 LEVVLTNAFGEPV-KDKEVVSSLVYADDGTVVAKSrDDSEPPLLITCEGLEYAAISRPLPIIRGRALFKLKISQLSSKCDNKLFRIKFSTLH 318 79**********9.*********************9******************************************************** PP STAT 92 lkkypfleavskpirCisrsrntrsssltk 121 +++y+flea+skpirCisrsr++r+++ tk GRMZM2G453001_P01 319 MQRYSFLEAYSKPIRCISRSRTVRPLGPTK 348 ************************998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF49899 | 3.31E-5 | 33 | 163 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
SuperFamily | SSF55550 | 3.85E-6 | 600 | 684 | IPR000980 | SH2 domain |
PROSITE profile | PS50001 | 9.426 | 606 | 704 | IPR000980 | SH2 domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 704 aa Download sequence Send to blast |
MAAPESECGG SDGYRDLRGV RVDLDTGAAR AGGGGGFAVS FWLYLSVSAR PSSVILHQIT 60 AGDDTKLPFL ALGEGNKLLL FPLMRLHREA PAPASSYPWT DTTNLSSTSV CPLEKWFHIG 120 CEVTENVMRL HVDGFLTAEA PLCSLFDEPD SQDDSNQISL VGNDGKLEGY IYNIEVSYVL 180 GAIKEQYTKN PPFKLSIDYS CSDGIEEGDD GIWSIVGGKA SCRRNFILEV VLTNAFGEPV 240 KDKEVVSSLV YADDGTVVAK SRDDSEPPLL ITCEGLEYAA ISRPLPIIRG RALFKLKISQ 300 LSSKCDNKLF RIKFSTLHMQ RYSFLEAYSK PIRCISRSRT VRPLGPTKRA SSATANEIDM 360 LSNGQGFVST DKVNSRGHSV CLHTPMFPKI EDGMVEVVEA HKIVSQNKNA RKVVVSKEAQ 420 NVIGTDSSTS NYDSFDSGSS WSGSEGDDGI ETFSDAVVFR YCLDSTYDRS KFLRGASLTV 480 NKDDLVKLAD RVSLYSGCSH HRNQILMSKR LLREGADTWN MISKNNERAL WSSAIPEIIT 540 KFTNIAHSVR RGLSEQDLEV LRGIAGCGED IGRDEFDRLW CWLYPVAVSL SRERIKKLWD 600 CTAPRWIEGL ITTEEAESAL RSSRELLKEA GTFVLRFPIT RSWPHPDAGS LVVTYIGSDS 660 SIHHRLLSLD SSDASAEKLQ DLLLQEPELS QLGRVDRVSI TIRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.23928 | 0.0 | embryo| meristem| ovary| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G453001 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G453001_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008651236.1 | 0.0 | SH2 domain-containing protein B isoform X2 | ||||
TrEMBL | A0A1D6JPB8 | 0.0 | A0A1D6JPB8_MAIZE; SH2 domain protein B | ||||
TrEMBL | A0A317YAD5 | 0.0 | A0A317YAD5_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G453001_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7547 | 31 | 35 | Representative plant | OGRP5941 | 16 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78540.1 | 1e-149 | SH2 domain protein B |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G453001_P01 |
Entrez Gene | 103631747 |