PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G451771_P01 | ||||||||
Common Name | ZEAMMB73_753276 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | Dof | ||||||||
Protein Properties | Length: 245aa MW: 24946.9 Da PI: 9.0169 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 91.7 | 6.1e-29 | 86 | 138 | 5 | 60 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +cprC s++tkfCyyn +sqPr+f +aCrryWt GG+lrnvP+Gg++rk+ + GRMZM2G451771_P01 86 GEQCPRCASHDTKFCYYN---TSQPRHFYRACRRYWTLGGSLRNVPIGGSTRKRPR 138 579*************87...79*****************************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50884 | 21.623 | 87 | 138 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.6E-24 | 87 | 136 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 3.0E-18 | 88 | 131 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MASFVPLLHN ACKHDVRHHL NTMPATWSGS TTNNVSATGA MAAATFGSTS NSNAAPSGAT 60 DMASYLQQLQ DIAAAKSSGG GGAARGEQCP RCASHDTKFC YYNTSQPRHF YRACRRYWTL 120 GGSLRNVPIG GSTRKRPRLG QGGGGLLGSM FALGAAGLLL EGRGAGSSFD FDFDLGLGLP 180 TGPLHLGAGA GAGAGEAAAL QMQGLGLRGG GSAAGSSAFL WPAGAGMLVD NDSVDTWKLH 240 RVSDA |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G451771 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G451771_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC582406 | 4e-54 | KC582406.1 Sorghum bicolor dof9 protein (dof9) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020401001.1 | 1e-138 | LOW QUALITY PROTEIN: dof zinc finger protein DOF1.6 | ||||
TrEMBL | K7UGC9 | 1e-175 | K7UGC9_MAIZE; Dof zinc finger protein DOF1.6 | ||||
STRING | GRMZM2G451771_P01 | 1e-176 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21340.1 | 3e-21 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G451771_P01 |
Entrez Gene | 103641366 |