PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G451035_P01 | ||||||||
Common Name | LOC103654284, ZEAMMB73_288331 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | WRKY | ||||||||
Protein Properties | Length: 305aa MW: 33982.3 Da PI: 7.0397 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 24.2 | 6.6e-08 | 170 | 216 | 21 | 59 |
-EEEEEE-ST...T---EEEEEE-SSSTT.....EEEEEEES--SS- CS WRKY 21 prsYYrCtsa...gCpvkkkversaedpk.....vveitYegeHnhe 59 rsYYrC+++ gCp++k v++++ ++ ++++ Y g+H ++ GRMZM2G451035_P01 170 NRSYYRCAYSkelGCPATKTVQQKEGGGNygtvrLFDVDYYGQHICN 216 6*******998999*********997765222226889999999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.2E-18 | 116 | 216 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.85E-12 | 124 | 216 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-22 | 130 | 217 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.2E-5 | 132 | 151 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.8E-10 | 169 | 215 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MNILESSDLG GYKEVKVMDE IEHQRALMVD LHDLVLPILD PCSGQAKLVQ QLFEEVFSCS 60 GKIISSLQPG RNDREKQAIL IKCKRKGCMG NVENNRVSEE NDGGGGKGRG NRRRKNAKHV 120 VSSVVTQAPN FDGYQWRKYG QKWISKAKHS RYDPNNAKKR GLMHEVIMSN RSYYRCAYSK 180 ELGCPATKTV QQKEGGGNYG TVRLFDVDYY GQHICNSHGR IVHPNVVVDE PATHDDGGVP 240 IVNQSSSSST SYAHGVQDES FGDLFMVPDM PEYLTELTDV EMANAFGFTA SMNSPLLVSE 300 DILWA |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.91995 | 5e-45 | ear| meristem| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G451035 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G451035_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU944187 | 3e-61 | EU944187.1 Zea mays clone 1711434 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021317522.1 | 1e-122 | probable WRKY transcription factor 67 | ||||
TrEMBL | K7U6F3 | 0.0 | K7U6F3_MAIZE; Putative WRKY DNA-binding domain superfamily protein | ||||
STRING | GRMZM2G451035_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13325 | 15 | 29 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01900.1 | 3e-13 | WRKY DNA-binding protein 62 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G451035_P01 |
Entrez Gene | 103654284 |