PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G450459_P01
Common NameLOC100272637
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family SRS
Protein Properties Length: 353aa    MW: 36229.5 Da    PI: 10.1621
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G450459_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702192.51.5e-591493202154
             DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa...aeaaskrkrelksk.kqsalsst 89 
                        +sg+a+CqdCGnqakk+Cah+RCRtCC+srgf+C thvkstWvpaa+r er q +  a + a+as    a  ++kr+r    + ++++ s++
  GRMZM2G450459_P01 149 GSGGATCQDCGNQAKKGCAHSRCRTCCNSRGFECDTHVKSTWVPAARRWERLQLAGGAGAGATASPpslAPTTTKRPRLACPTpTRTTNSRA 240
                        57899**********************************************99998887777776666678888999988555145666778 PP

             DUF702  90 klssaeskkeletss..........lPeevsseavfrcvrvssvddg.....eeelaYqtavsigGhvfkGiLydqGlee 154
                        ++s+a+++++++tss          lP++v+ +avfrcvrv+svddg     + e+aYq+av+i+Gh+f+G+Lyd+G+e+
  GRMZM2G450459_P01 241 STSNATTPRSFDTSSshqdasfkdsLPRQVRGPAVFRCVRVTSVDDGggggtNGEVAYQAAVTINGHLFRGLLYDHGAED 320
                        99999******999999*****************************533444679**********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051426.9E-54152319IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.4E-25154196IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.9E-20266317IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MAGPGPALQA AAARLRSCRV AIDPDRAGAD SRSIFPRPFL RSSAGLWGPA ASRQAAGYGA  60
IGATGDVGML VVAPAGSFHH QRAAADDPVL PLITAAQRTL VGADGPSGNA KLPVSSAGAI  120
QFWQQEPAAG GSLGKKALAM LDHGRGGSGS GGATCQDCGN QAKKGCAHSR CRTCCNSRGF  180
ECDTHVKSTW VPAARRWERL QLAGGAGAGA TASPPSLAPT TTKRPRLACP TPTRTTNSRA  240
STSNATTPRS FDTSSSHQDA SFKDSLPRQV RGPAVFRCVR VTSVDDGGGG GTNGEVAYQA  300
AVTINGHLFR GLLYDHGAED AVMPTASDLN LRSTRAPRSS SAAWATVTHH ELI
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G450459
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the early stages of root primordium development and disappears prior to the emergence of lateral roots from the parent root. {ECO:0000269|PubMed:7647564}.
UniprotTISSUE SPECIFICITY: Restricted to lateral root primordia. {ECO:0000269|PubMed:7647564}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G450459_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0390920.0BT039092.1 Zea mays full-length cDNA clone ZM_BFb0370H22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001140570.11e-154uncharacterized protein LOC100272637
SwissprotQ94CK99e-47LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A1D6M3130.0A0A1D6M313_MAIZE; Protein SHI RELATED SEQUENCE 6
STRINGGRMZM2G450459_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35793679
Representative plantOGRP13131549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.27e-38Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]