PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G450445_P02
Common NameLOC100280364
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 438aa    MW: 48176.4 Da    PI: 6.0695
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G450445_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM87.42.7e-27572051128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra....... 77 
                        lp+G++F+Ptd e++ ++L++k +  +      ++++   ike  +i++++P+++p  +k + + ++fF +  ++y tg+rk+r        
  GRMZM2G450445_P02  57 LPAGVKFDPTDLEIL-QHLQEKSSLPNsvshtlIDEFIPtIKEEeGICYTHPKNFP-GIKMDGSYLHFFNRVLNAYDTGTRKRRRiiatgdi 146
                        799***********9.788888776665665554443334777768**********.667788999******************66899999 PP

                NAM  78 .....tksgyWkatgkdkevlskkgelvglkktLvfy...kgrapkgektdWvmheyrl 128
                               +++W++tg +k+v++++g  +g kk+Lv+y   k+   ++e+ +Wvmh+y+l
  GRMZM2G450445_P02 147 cdgvvNGNSRWHKTGASKPVFDENGVRKGWKKILVLYkapKKVGDRPERENWVMHQYHL 205
                        9987666899***************************444334455669********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-3242224IPR003441NAC domain
PROSITE profilePS5100529.28357224IPR003441NAC domain
PfamPF023653.9E-1158205IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0006340anatomyadult vascular leaf
PO:0006505anatomycentral spike of ear inflorescence
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009066anatomyanther
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020126anatomytassel inflorescence
PO:0001007developmental stagepollen development stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MDTSWIMNGL GLAEKIRSAT QSFTLRLGEL FAKPRTKCTY CDCVIDISNV SLVWPALPAG  60
VKFDPTDLEI LQHLQEKSSL PNSVSHTLID EFIPTIKEEE GICYTHPKNF PGIKMDGSYL  120
HFFNRVLNAY DTGTRKRRRI IATGDICDGV VNGNSRWHKT GASKPVFDEN GVRKGWKKIL  180
VLYKAPKKVG DRPERENWVM HQYHLGVNED ESNGEFVVCK VFYQSPLKKN GKSKTDVVVE  240
SDASVAKINP RTPMTDPPQR RRLNNSSCNT GQHTPTQALQ GEEECGTSKM KTEAAECSAC  300
FAESSPAIPT SDAPVRTPMT DRPQPRRLNN SRCNTRRCTP IQSDQGAEEC GTSKVKIEAA  360
ECSSACIAEL SPAIPTSAEP MQPTDALDAS LPVDDLFHGL LDLDNTLPFT ETPSGGGISL  420
DDIFGPLDSL GAWPDGFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134138RKRRR
2135139KRRRI
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G450445
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G450445_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0560890.0BT056089.1 Zea mays full-length cDNA clone ZM_BFb0005H19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146762.10.0uncharacterized protein LOC100280364
TrEMBLB8A3E70.0B8A3E7_MAIZE; Uncharacterized protein
STRINGGRMZM2G450445_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21103799
Representative plantOGRP1983722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.14e-70NAC family protein