PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G450445_P01
Common NameLOC100280364
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 289aa    MW: 32655.2 Da    PI: 9.5203
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G450445_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM88.71e-27572051128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra....... 77 
                        lp+G++F+Ptd e++ ++L++k +  +      ++++   ike  +i++++P+++p  +k + + ++fF +  ++y tg+rk+r        
  GRMZM2G450445_P01  57 LPAGVKFDPTDLEIL-QHLQEKSSLPNsvshtlIDEFIPtIKEEeGICYTHPKNFP-GIKMDGSYLHFFNRVLNAYDTGTRKRRRiiatgdi 146
                        799***********9.788888776665665554443334777768**********.667788999******************66899999 PP

                NAM  78 .....tksgyWkatgkdkevlskkgelvglkktLvfy...kgrapkgektdWvmheyrl 128
                               +++W++tg +k+v++++g  +g kk+Lv+y   k+   ++e+ +Wvmh+y+l
  GRMZM2G450445_P01 147 cdgvvNGNSRWHKTGASKPVFDENGVRKGWKKILVLYkapKKVGDRPERENWVMHQYHL 205
                        9987666899***************************444334455669********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.24E-3342224IPR003441NAC domain
PROSITE profilePS5100529.28357224IPR003441NAC domain
PfamPF023651.5E-1158205IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MDTSWIMNGL GLAEKIRSAT QSFTLRLGEL FAKPRTKCTY CDCVIDISNV SLVWPALPAG  60
VKFDPTDLEI LQHLQEKSSL PNSVSHTLID EFIPTIKEEE GICYTHPKNF PGIKMDGSYL  120
HFFNRVLNAY DTGTRKRRRI IATGDICDGV VNGNSRWHKT GASKPVFDEN GVRKGWKKIL  180
VLYKAPKKVG DRPERENWVM HQYHLGVNED ESNGEFVVCK VFYQSPLKKN GKSKTDVVVE  240
SDASVAKINP RTPMTDPPQR RRLNNSSCNT GQHTPTQDDR GKKNVAHQR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134138RKRRR
2135139KRRRI
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G450445
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G450445_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0560890.0BT056089.1 Zea mays full-length cDNA clone ZM_BFb0005H19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146762.10.0uncharacterized protein LOC100280364
TrEMBLB8A3E70.0B8A3E7_MAIZE; Uncharacterized protein
STRINGGRMZM2G450445_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.17e-72NAC family protein