PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G448104_P03
Common NameLOC100272535, ZEAMMB73_901975
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 1151aa    MW: 127508 Da    PI: 9.2302
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G448104_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.4e-084686345
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                        W+++E e+++ a +++G++ W+++a t+   Rt  ++k  ++
  GRMZM2G448104_P03 46 QWSKDELERFYGAYRKYGKD-WRKVAGTIR-DRTSDMVKALYN 86
                       6*****************99.*********.****99997666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.36E-104192IPR009057Homeodomain-like
PROSITE profilePS500906.0054586IPR017877Myb-like domain
PfamPF002498.2E-64687IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-54686IPR009057Homeodomain-like
CDDcd001674.23E-44789No hitNo description
PfamPF065842.3E-32628728IPR033471DIRP domain
SMARTSM011353.1E-56628729IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1151 aa     Download sequence    Send to blast
MASARKVRNA NKRYAKINED WQDKDTPSVP KSKVRKKKLS DMLGSQWSKD ELERFYGAYR  60
KYGKDWRKVA GTIRDRTSDM VKALYNMNKA YLSLPEGTAT AAGLIAMMTD HYNILDGSNS  120
DRESSDSPKA SRRLQKRGRA KLQSVSKTSD THFTDLLQPQ PASSSYGCLS LLKKKRSGDL  180
FVGNRPRAVG KRTPRVPVAS MYHRDDRGAP NRQAKPDAND GDDEGAHVAA LALAEVHQRG  240
GSPQISHTPR RSGDHMFLSP AKSSGRKNAD SEMGSSKLHG FQLDADYPEG SLGSREAETG  300
DYTKGTSYLI ANKGSPSSKP QKKVKRPQKR RKKAVRRTDD QFEDDREACS GTEEGCSMKK  360
AKEEPELETL GTKTAWPSST SNKRSRQLFF DDESLALDAL HTLADLSVNI LQPSSVVESE  420
SSAQIKDEKR DNDSDGKPGI PAAAVSVYEQ KDNSKSTSKK LKRQPEMAST DMVTRKKGKL  480
AKDTHPDGST TSEVKQQACT CGVKTEKKKK SSMGKILKDE KKMPKDVEKT EVSPEEEKTS  540
SNKTMDIAET TTQVATTLHA DLMAKGKSRR KLGIQKSLTQ ECKPAEGAGD SGSDKLSYSL  600
SNIIDLKDKL SHCLSSRLLR RWCMFEWFYS AIDYPWFAKS EFVEYLNHVK LGHVPRLTHV  660
EWGVIRSSLG KPRRLSKQFL HEEREKLAQY RDSVRQHYTE LLSGVREGLP TDLARPLAVG  720
QRVIACHPRT RELHDGNVLT VDHNQCRVQF DRPELGVELV KDIDCMPLHP LENFPESLRH  780
QSAINGYYSH LSEAKYEDQM KELASGGAAR STSNLNGTDA TFYTPSGHPM STLMKQAKAN  840
TAVNEVAVAT QQSMYNQPCT LSQIQEREAD IRALGELSRA LDKKEALLVE LRHMNEEVSG  900
KQKDGEIIKD LEHFRKQYAM VLVQLRDSND QVAAALLSLR QRNTYHGNSG QSKSMENGIA  960
LAGAPDPYNL FSYINPESGS QVIEVIETSK SRAKMMVDVA IQAMCKVSEG ENAFSKIGEA  1020
LDHLNSRGTG SGSSILGIRR IPPDSGQSNA SYHDDCTAAP AANSSSRLPN GCDSEAQFPK  1080
ELISSCVAMM LMIKNCTEKQ YHPAEVAHIL DSALSSVQPC SSQNIPIFRE IEMCMGIIKN  1140
QMLALIPTPS G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1320336QKKVKRPQKRRKKAVRR
2323329VKRPQKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.666530.0embryo| endosperm| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G448104
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G448104_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0389050.0BT038905.1 Zea mays full-length cDNA clone ZM_BFb0339F13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001345294.10.0uncharacterized protein LOC100272535
TrEMBLK7TNU90.0K7TNU9_MAIZE; Putative MYB DNA-binding domain superfamily protein
STRINGGRMZM2G448104_P030.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62302331
Representative plantOGRP24791321
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding