PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G448104_P03 | ||||||||
Common Name | LOC100272535, ZEAMMB73_901975 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB_related | ||||||||
Protein Properties | Length: 1151aa MW: 127508 Da PI: 9.2302 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.8 | 2.4e-08 | 46 | 86 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W+++E e+++ a +++G++ W+++a t+ Rt ++k ++ GRMZM2G448104_P03 46 QWSKDELERFYGAYRKYGKD-WRKVAGTIR-DRTSDMVKALYN 86 6*****************99.*********.****99997666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.36E-10 | 41 | 92 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.005 | 45 | 86 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 8.2E-6 | 46 | 87 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-5 | 46 | 86 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.23E-4 | 47 | 89 | No hit | No description |
Pfam | PF06584 | 2.3E-32 | 628 | 728 | IPR033471 | DIRP domain |
SMART | SM01135 | 3.1E-56 | 628 | 729 | IPR033471 | DIRP domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0016592 | Cellular Component | mediator complex | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1151 aa Download sequence Send to blast |
MASARKVRNA NKRYAKINED WQDKDTPSVP KSKVRKKKLS DMLGSQWSKD ELERFYGAYR 60 KYGKDWRKVA GTIRDRTSDM VKALYNMNKA YLSLPEGTAT AAGLIAMMTD HYNILDGSNS 120 DRESSDSPKA SRRLQKRGRA KLQSVSKTSD THFTDLLQPQ PASSSYGCLS LLKKKRSGDL 180 FVGNRPRAVG KRTPRVPVAS MYHRDDRGAP NRQAKPDAND GDDEGAHVAA LALAEVHQRG 240 GSPQISHTPR RSGDHMFLSP AKSSGRKNAD SEMGSSKLHG FQLDADYPEG SLGSREAETG 300 DYTKGTSYLI ANKGSPSSKP QKKVKRPQKR RKKAVRRTDD QFEDDREACS GTEEGCSMKK 360 AKEEPELETL GTKTAWPSST SNKRSRQLFF DDESLALDAL HTLADLSVNI LQPSSVVESE 420 SSAQIKDEKR DNDSDGKPGI PAAAVSVYEQ KDNSKSTSKK LKRQPEMAST DMVTRKKGKL 480 AKDTHPDGST TSEVKQQACT CGVKTEKKKK SSMGKILKDE KKMPKDVEKT EVSPEEEKTS 540 SNKTMDIAET TTQVATTLHA DLMAKGKSRR KLGIQKSLTQ ECKPAEGAGD SGSDKLSYSL 600 SNIIDLKDKL SHCLSSRLLR RWCMFEWFYS AIDYPWFAKS EFVEYLNHVK LGHVPRLTHV 660 EWGVIRSSLG KPRRLSKQFL HEEREKLAQY RDSVRQHYTE LLSGVREGLP TDLARPLAVG 720 QRVIACHPRT RELHDGNVLT VDHNQCRVQF DRPELGVELV KDIDCMPLHP LENFPESLRH 780 QSAINGYYSH LSEAKYEDQM KELASGGAAR STSNLNGTDA TFYTPSGHPM STLMKQAKAN 840 TAVNEVAVAT QQSMYNQPCT LSQIQEREAD IRALGELSRA LDKKEALLVE LRHMNEEVSG 900 KQKDGEIIKD LEHFRKQYAM VLVQLRDSND QVAAALLSLR QRNTYHGNSG QSKSMENGIA 960 LAGAPDPYNL FSYINPESGS QVIEVIETSK SRAKMMVDVA IQAMCKVSEG ENAFSKIGEA 1020 LDHLNSRGTG SGSSILGIRR IPPDSGQSNA SYHDDCTAAP AANSSSRLPN GCDSEAQFPK 1080 ELISSCVAMM LMIKNCTEKQ YHPAEVAHIL DSALSSVQPC SSQNIPIFRE IEMCMGIIKN 1140 QMLALIPTPS G |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 320 | 336 | QKKVKRPQKRRKKAVRR |
2 | 323 | 329 | VKRPQKR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.66653 | 0.0 | embryo| endosperm| meristem| ovary| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G448104 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G448104_P03 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT038905 | 0.0 | BT038905.1 Zea mays full-length cDNA clone ZM_BFb0339F13 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001345294.1 | 0.0 | uncharacterized protein LOC100272535 | ||||
TrEMBL | K7TNU9 | 0.0 | K7TNU9_MAIZE; Putative MYB DNA-binding domain superfamily protein | ||||
STRING | GRMZM2G448104_P03 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6230 | 23 | 31 | Representative plant | OGRP2479 | 13 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 0.0 | DNA binding |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G448104_P03 |
Entrez Gene | 100272535 |