PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G447745_P01
Common NameLOC100384382
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 1657aa    MW: 180382 Da    PI: 6.3427
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G447745_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.73.1e-09814856347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT++E e++ +  +++G++ +++I++ +  ++t  +c+++++k+
  GRMZM2G447745_P01 814 PWTQDEKEIFMEMLAKFGKD-FSKISSFIT-HKTTADCVEFYYKH 856
                        8*****************99.********9.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.0E-7806859IPR009057Homeodomain-like
SuperFamilySSF466895.91E-14806859IPR009057Homeodomain-like
PROSITE profilePS5129315.641810861IPR017884SANT domain
SMARTSM007171.7E-9811859IPR001005SANT/Myb domain
PfamPF002492.6E-7813856IPR001005SANT/Myb domain
PROSITE profilePS5129311.66410201071IPR017884SANT domain
SMARTSM007175.1E-610211069IPR001005SANT/Myb domain
SuperFamilySSF466897.8E-910241071IPR009057Homeodomain-like
CDDcd001671.68E-410251063No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 1657 aa     Download sequence    Send to blast
MPPPPPDRRD YLYREGRRHD GGVGDSLLPP APTPPRWRDS PYHPPPPPPL RDPARPSPRR  60
APPLASSGGH APRECSDLRP PPPRRPPLVP LISSNRSAIS EGYYRQGGGA YDRSYPDDPP  120
SVYTPSRSDR YWPEDDDGGY KGFGRYGSGG RRDGRDMRGS YRKSPYRGGY GSDFSRNHSE  180
QPPPPPPRRS PLRSVAVPIC YDPPGNRINR GDRDNLPRVT PWRRRESRSE VADADGPLSV  240
GQSTRLSASG KEASAQPLAA AGPHGTEDEA PRKKARLGWG QGLAKYEKQK VQGPSDPAEV  300
VADVSSGDGE QKTSLAPAPS VASVFPAAPL PESAPAPPAA LALSSAPMRC SSPVTAPPYC  360
SSAPEDKSCE MTPNTVTNST KDVLEADGKT FNNEFSIKLD QLGDDPINGL TNILVELMQH  420
NDSCSGDSNG PTSTCKLLQL KESISKEIEK TELQIDSLEG ELKSVNTEAV TTLESSPTGV  480
THTENLSPSG GTSKVPGSAE ICDTFDMIKE PGELIVSPKV PVVQDADVKG VDMMEVETAP  540
VRNAKTVPSE ESAVTPGVAE GKACAAADLS SLIASEEAGS QNDIDNDRPK TSLCHADSMK  600
IKVSDELPVK QWTYCDHMSD LHSSFTSANN DIAKEMNEVL FKSLPAGTSA LDLLASSDLL  660
SQRKIDLIVK ERLGVRKTRL RLKEQILTMK FKAYRHLWKE DVRLLSAKKQ RLKSNKRIDQ  720
NNRTSQIGSQ RQRFSNRSRL AMPAGNLSTF STPEMSDVAR KLFSESQIKR CRNYLKMPAL  780
IIDEKEKEHL RFLTKNGLVV DPVLVEKERI MINPWTQDEK EIFMEMLAKF GKDFSKISSF  840
ITHKTTADCV EFYYKHHKSD SFREVKKLLD LHQQLPASNY LGAKSGQKWN PESNAASLDM  900
LGVASAEAAH DLEYANKVEK ISVKSLIRTA YGSNVSFVTK KSSDKECIDN VPLHERESVA  960
ADVLAGICGT PSPDGMGSCI TSSADPGLKI SMKRVEHVLS QENDKNVNEE ESLSDQECEF  1020
DPVDWNDDEK SIFIEAMNNY GKDFSRISSC VKSKSYEQCK VFFSKARKSL GLDLIHQGAA  1080
DVSMPASDTN GGRSDTDEAC AVEMDSAICR KQSCSKIVQD VCPTEGAILG PDSVLISKQT  1140
EGDISNRCIV DVKIEEDDKE ADKNCSNVDD KRSSDSTHQA GPININCPES TDKLQGTDDA  1200
VDQVNMHSSV LNSSNEHAMA MHSEVRSSLH SVDVLQTDKA EGTGTDPSQV EECSHHAVYT  1260
PMTAGNSGSS AFLTSDSGIK DNVHISNMSG ASTVSPAFTS NYQHSLPGDM PLSKPKPLVT  1320
SLTPKDLMPV QFSSVLPDPT AFRFEGIKPN FEDSSGNKVS SALGAKDICK YPAFKDPSDN  1380
EHDTLFRNID GYMNNHLTTE LPVFSQRTAS GTVSTSQTKF QNGRSSSVCL PNSSEGIQWP  1440
RKPEEVPEDS LRPCARNAKT EGGEKQKRPG DVKLFGQILS HQPTLPSSGS LCNGSQSKPP  1500
SPKIDKTSVR LTNNPRDLVV FSSRPGVSPH VGLEERSVRS YGHLDGSTIQ PEPLLVMAKC  1560
QRSLASVPFY SAKNSTVGVF PDYQQPSMQP HQLDPKPLEM FSDSQKRNGL ELVSGFGGAG  1620
ILVSNVSDHV AALKARYGPG SKIMGSDADP WKDIGSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a69_C9e-15772863494NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D9e-15772863494NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.69640.0ear| embryo| endosperm| leaf| meristem| pericarp| root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G447745
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G447745_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9446400.0EU944640.1 Zea mays clone 224849 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001349284.10.0uncharacterized protein LOC100384382
RefseqXP_020394715.10.0uncharacterized protein LOC100384382 isoform X1
TrEMBLA0A1D6LGI10.0A0A1D6LGI1_MAIZE; Putative MYB DNA-binding domain superfamily protein
STRINGGRMZM2G447745_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62993549
Representative plantOGRP32151725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.11e-80MYB family protein