PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G447551_P01 | ||||||||
Common Name | LOC103631862, Zm.141574 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | CAMTA | ||||||||
Protein Properties | Length: 1025aa MW: 114417 Da PI: 6.3786 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 177.8 | 1.3e-55 | 19 | 136 | 2 | 118 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 lke ++rwl++ ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG+sw+kkkdgktv+E+he+LK g+v+vl+cyYah+e n+ GRMZM2G447551_P01 19 LKEaQHRWLRPAEICEILKNYRNFHIAPEPPNRPPSGSLFLFDRKVLRYFRKDGHSWRKKKDGKTVKEAHERLKSGSVDVLHCYYAHGEGNE 110 45559*************************************************************************************** PP CG-1 93 tfqrrcywlLeeelekivlvhylevk 118 +fqrr+yw+Lee++ +ivlvhylevk GRMZM2G447551_P01 111 NFQRRSYWMLEEDFMHIVLVHYLEVK 136 ***********************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 82.727 | 15 | 141 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 3.1E-78 | 18 | 136 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.9E-49 | 21 | 135 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 1.3E-6 | 420 | 525 | IPR013783 | Immunoglobulin-like fold |
CDD | cd00102 | 0.0019 | 440 | 527 | No hit | No description |
Pfam | PF01833 | 1.7E-6 | 441 | 519 | IPR002909 | IPT domain |
SuperFamily | SSF81296 | 3.4E-17 | 441 | 526 | IPR014756 | Immunoglobulin E-set |
SuperFamily | SSF48403 | 5.75E-18 | 619 | 735 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.43E-15 | 621 | 733 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 8.0E-18 | 632 | 738 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 18.324 | 632 | 745 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 9.351 | 641 | 673 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 1100 | 641 | 670 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 8.736 | 674 | 706 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.013 | 674 | 703 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 3500 | 713 | 742 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 1.89E-8 | 845 | 898 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.07 | 847 | 869 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.169 | 848 | 877 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0029 | 849 | 868 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0022 | 870 | 892 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.578 | 871 | 895 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 2.0E-4 | 873 | 892 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1025 aa Download sequence Send to blast |
MAEARRHAVA PQLDIEQILK EAQHRWLRPA EICEILKNYR NFHIAPEPPN RPPSGSLFLF 60 DRKVLRYFRK DGHSWRKKKD GKTVKEAHER LKSGSVDVLH CYYAHGEGNE NFQRRSYWML 120 EEDFMHIVLV HYLEVKGGKS TSRIRGHDDM LQAARTDSPL SQLPSQTTEG GNSLSGQASE 180 YEETESDIYS GGAGYHPFSW TQHHENGGGP VIGTSIPSSY VPALPLGNLQ GFPATVTNTD 240 IYSRQDALPV TLNEPGLAIE FNGADNQLDP SSLNGLVKPF LQMSTPQSTV PSELFPFTEE 300 HGNESFTFHE VYSNGLSIKD AEIVGTNEES VWKLPGAISS IPSEDSFQQN DRSLEETISY 360 PLLKTRSSNL SEMLKDSFKK SDSFTRWMSK ALGEVDSQIK SSSGVYWNSE ETNNIIETSS 420 CDQLDQCTID PVLAQEQLFS IVDFSPSWTY AGSKTRVLIN GKFLNSAELK RCKWSCMFGE 480 VEVPAEISAD GILRCYSPSH KPGRVPFYVT CTNRLACSEI REFEFRPSVT QYMDAPSPHG 540 ATNKTYLQMR LDNLLSLGHN EYQATVSNPT KEMVDLSKKI SSLMTDNDSW SQLLKLASDN 600 EPVTDDDQDE FFEKHLKEKL HIWLVHKASD GGKGPNVLDD EGQGVLHLAA ALGYDWVIRP 660 AVSAGVNINF RDAHGWTALH WAAFCGRERT VVALIALGAA PGALTDPTPI FPTGSTPADL 720 ASANGYKGIS GFLAESSLTS HLQTLDLKEG KGSNPPEISG LPGIGDVTER RASPLAGEGL 780 QAGSMGDSLG AIRNAAQAAA RIYQVFRVQS FQRKQAVQYE DDNGAVSDDR AISLLSVKPS 840 KPVQLDPLHA AATRIQNKYR GWKGRKEFLL IRQRIVKIQA HVRGHQVRKH YRKIIWSVGI 900 VEKIILRWRR KGAGLRGFRS TEGATVGSSS NLIQNKPEDD YDFLQQGRKQ TEERLQKALA 960 RVKSMAQYPD ARDQYQRILT VVTKIQESKA MQEKMLEEST EMDEGFFMSD FKELWDDDIP 1020 MPSWS |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Zm.141574 | 7e-56 | meristem |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G447551 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G447551_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008651919.1 | 0.0 | calmodulin-binding transcription activator 1 isoform X2 | ||||
TrEMBL | A0A1D6JR86 | 0.0 | A0A1D6JR86_MAIZE; Calmodulin-binding transcription activator 2 | ||||
STRING | GRMZM2G447551_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP608 | 38 | 140 | Representative plant | OGRP562 | 15 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G22300.2 | 0.0 | signal responsive 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G447551_P01 |
Entrez Gene | 103631862 |