PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G446515_P03
Common NameLOC100192608
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family BES1
Protein Properties Length: 484aa    MW: 54940.3 Da    PI: 5.1148
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G446515_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822120.52.4e-3746121176
             DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl 76 
                        g+s r++  +E+E++k RER+RRai+ +i+aGLR++Gny+l++raD+neV++AL+reAGwvv +DGtt++ +s+  
  GRMZM2G446515_P03  46 GTSNRRRAREEKERTKMRERQRRAITGRILAGLRQHGNYRLRARADINEVIAALAREAGWVVLPDGTTFPSSSSFA 121
                        57899*****************************************************************887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056875.4E-3448128IPR008540BES1/BZR1 plant transcription factor, N-terminal
PfamPF013731.2E-92122471IPR001554Glycoside hydrolase, family 14
Gene3DG3DSA:3.20.20.804.1E-169124481IPR013781Glycoside hydrolase, catalytic domain
SuperFamilySSF514455.05E-155125481IPR017853Glycoside hydrolase superfamily
PRINTSPR007502.6E-64128149IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060132140IPR018238Glycoside hydrolase, family 14, conserved site
PRINTSPR008424.8E-8211220IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007502.6E-64221243IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.6E-64294313IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.6E-64328344IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.6E-64345356IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.6E-64363386IPR001554Glycoside hydrolase, family 14
PRINTSPR008424.8E-8366376IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007502.6E-64403425IPR001554Glycoside hydrolase, family 14
PRINTSPR008424.8E-8454468IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR008424.8E-8469483IPR001371Glycoside hydrolase, family 14B, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MQQAGLADDD DEEIWVKEED DEEEEDGYYM DPRSPAVWTP GGRAGGTSNR RRAREEKERT  60
KMRERQRRAI TGRILAGLRQ HGNYRLRARA DINEVIAALA REAGWVVLPD GTTFPSSSSF  120
AAVAAQVVMS FHECGGNVGD DISIPLPHWV IEIGRSNPDI YFTDRAGRRN TECLSWGVDK  180
ERVLQGRTAV EVYFDFMRSF RVEFDEYFED GIISEIEIGL GACGELRYPS YPAKHGWKYP  240
GIGEFQCYDR YLQKSLRKAA EARGHTIWAR GPDNAGHYNS EPNLTGFFCD GGDYDSYYGR  300
FFLSWYSQAL VDHADRVLML ARLAFEGTNI AVKVSGVHWW YKTASHAAEL TAGFYNPCNR  360
DGYAPIAAVL KKYDAALNFT CVELRTMDQH EVYPEAFADP EGLVWQVLNA AWDAGIQVAS  420
ENALPCYDRD GFNKILENAK PLNDPDGRHL LGFTYLRLGK DLFERPNFFE FERFIKRMHG  480
GNIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1q6d_A1e-13012148082443beta-amylase
2dqx_A1e-13012148082443Beta-amylase
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.298680.0cell culture| endosperm| meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G446515
Functional Description ? help Back to Top
Source Description
UniProtLow beta-amylase activity. Interacts poorly with starch or other alpha-1,4-glucan. {ECO:0000269|PubMed:18390594, ECO:0000269|PubMed:19664588}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G446515_P03
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly by cold stress. {ECO:0000269|PubMed:16297066}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0639000.0BT063900.1 Zea mays full-length cDNA clone ZM_BFc0118E07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023156259.10.0uncharacterized protein LOC100278364 isoform X1
SwissprotO652580.0BAM2_ARATH; Beta-amylase 2, chloroplastic
TrEMBLA0A1D6I0970.0A0A1D6I097_MAIZE; Beta-amylase
STRINGGRMZM2G446515_P050.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.11e-176beta-amylase 7
Publications ? help Back to Top
  1. Smith AM,Zeeman SC,Smith SM
    Starch degradation.
    Annu Rev Plant Biol, 2005. 56: p. 73-98
    [PMID:15862090]
  2. Lundmark M,Cavaco AM,Trevanion S,Hurry V
    Carbon partitioning and export in transgenic Arabidopsis thaliana with altered capacity for sucrose synthesis grown at low temperature: a role for metabolite transporters.
    Plant Cell Environ., 2006. 29(9): p. 1703-14
    [PMID:16913860]
  3. Li J, et al.
    Catalytically-inactive beta-amylase BAM4 required for starch breakdown in Arabidopsis leaves is a starch-binding-protein.
    Arch. Biochem. Biophys., 2009. 489(1-2): p. 92-8
    [PMID:19664588]
  4. Andriotis VM,Pike MJ,Kular B,Rawsthorne S,Smith AM
    Starch turnover in developing oilseed embryos.
    New Phytol., 2010. 187(3): p. 791-804
    [PMID:20546137]
  5. Monroe JD, et al.
    Arabidopsis β-Amylase2 Is a K+-Requiring, Catalytic Tetramer with Sigmoidal Kinetics.
    Plant Physiol., 2017. 175(4): p. 1525-1535
    [PMID:29066669]