PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G446426_P01 | ||||||||
Common Name | ZEAMMB73_173522 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 259aa MW: 29609.3 Da PI: 10.1032 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 77.5 | 9.8e-25 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien +nrqvtfskR g++KKA+E+ +LCda++ viifs +g++yeyss GRMZM2G446426_P01 9 KKIENPTNRQVTFSKRWMGLFKKANEVAILCDAQIRVIIFSGSGRMYEYSS 59 68***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.1E-34 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.66 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.97E-25 | 1 | 64 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.76E-32 | 2 | 60 | No hit | No description |
PRINTS | PR00404 | 2.0E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.9E-22 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF13012 | 1.0E-13 | 120 | 245 | IPR024969 | Rpn11/EIF3F, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MGRGKVELKK IENPTNRQVT FSKRWMGLFK KANEVAILCD AQIRVIIFSG SGRMYEYSSP 60 PWSLKPSVKK EEMMIRCVSF EALNPRAIAV VIDPIQSVKG KVVIDAFRLI NPQTMMLGQE 120 PRQTTSNVGH LNKPSIQALI HGLNRHYYSI AINYRKNELE EKMLLNLHKK KWTDGLILKR 180 FDTHSKTNEQ TVQEMLNLAI KYNKAVQEED ELPPEKLAIA NVGRQDAKKH LEEHVSNLMS 240 SNNVDTTIGW NALINSFSH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5t0i_c | 3e-85 | 79 | 244 | 131 | 296 | 26S proteasome non-ATPase regulatory subunit 14 |
5t0j_c | 3e-85 | 79 | 244 | 131 | 296 | 26S proteasome non-ATPase regulatory subunit 14 |
5vfp_c | 1e-85 | 79 | 244 | 109 | 274 | 26S proteasome non-ATPase regulatory subunit 14 |
5vfq_c | 1e-85 | 79 | 244 | 109 | 274 | 26S proteasome non-ATPase regulatory subunit 14 |
5vfr_c | 1e-85 | 79 | 244 | 109 | 274 | 26S proteasome non-ATPase regulatory subunit 14 |
5vfs_c | 3e-85 | 79 | 244 | 131 | 296 | 26S proteasome non-ATPase regulatory subunit 14 |
5vft_c | 1e-85 | 79 | 244 | 109 | 274 | 26S proteasome non-ATPase regulatory subunit 14 |
5vfu_c | 1e-85 | 79 | 244 | 109 | 274 | 26S proteasome non-ATPase regulatory subunit 14 |
5vgz_c | 1e-85 | 79 | 244 | 109 | 274 | 26S proteasome non-ATPase regulatory subunit 14 |
5vhf_c | 1e-85 | 79 | 244 | 109 | 274 | 26S proteasome non-ATPase regulatory subunit 14 |
5vhh_c | 1e-85 | 79 | 244 | 109 | 274 | 26S proteasome non-ATPase regulatory subunit 14 |
5vhi_c | 1e-85 | 79 | 244 | 109 | 274 | 26S proteasome non-ATPase regulatory subunit 14 |
5vhs_c | 1e-85 | 79 | 244 | 109 | 274 | 26S proteasome non-ATPase regulatory subunit 14 |
6msb_c | 3e-85 | 79 | 244 | 131 | 296 | 26S proteasome non-ATPase regulatory subunit 14 |
6msd_c | 3e-85 | 79 | 244 | 131 | 296 | 26S proteasome non-ATPase regulatory subunit 14 |
6mse_c | 3e-85 | 79 | 244 | 131 | 296 | 26S proteasome non-ATPase regulatory subunit 14 |
6msg_c | 3e-85 | 79 | 244 | 131 | 296 | 26S proteasome non-ATPase regulatory subunit 14 |
6msh_c | 3e-85 | 79 | 244 | 131 | 296 | 26S proteasome non-ATPase regulatory subunit 14 |
6msj_c | 3e-85 | 79 | 244 | 131 | 296 | 26S proteasome non-ATPase regulatory subunit 14 |
6msk_c | 3e-85 | 79 | 244 | 131 | 296 | 26S proteasome non-ATPase regulatory subunit 14 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.67815 | 1e-166 | aerial organ| cell culture| cell lignification| ear| embryo| endosperm| leaf| meristem| ovary| pollen| root| shoot| silk| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G446426 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous with highest expression in flowers. {ECO:0000269|PubMed:14623884}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Metalloprotease component of the 26S proteasome that specifically cleaves 'Lys-63'-linked polyubiquitin chains. The 26S proteasome is involved in the ATP-dependent degradation of ubiquitinated proteins. The function of the 'Lys-63'-specific deubiquitination of the proteasome is unclear (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G446426_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT009132 | 0.0 | BT009132.1 Triticum aestivum clone wl1n.pk0036.c3:fis, full insert mRNA sequence. | |||
GenBank | EU961848 | 0.0 | EU961848.1 Zea mays clone 238614 26S proteasome non-ATPase regulatory subunit 14 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008680731.2 | 1e-179 | 26S proteasome non-ATPase regulatory subunit 14 homolog | ||||
Swissprot | Q9LT08 | 1e-108 | PSDE_ARATH; 26S proteasome non-ATPase regulatory subunit 14 homolog | ||||
TrEMBL | A0A3L6EIU7 | 1e-120 | A0A3L6EIU7_MAIZE; 26S proteasome non-ATPase regulatory subunit 14 | ||||
STRING | GRMZM2G446426_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03710.3 | 2e-25 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G446426_P01 |