PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G445944_P01 | ||||||||
Common Name | LOC100278144, TCP4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | TCP | ||||||||
Protein Properties | Length: 207aa MW: 21115.7 Da PI: 10.8979 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 126.4 | 2.9e-39 | 31 | 122 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg... 88 a++k +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ +++s +ss+s s + GRMZM2G445944_P01 31 AVRKAPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStsSPSSLRSSSS--STAgvh 120 789*************************************************************99999888543333333333..111233 PP TCP 89 .k 89 + GRMZM2G445944_P01 121 pH 122 31 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 28.209 | 37 | 91 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.2E-33 | 37 | 122 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MTTRPDGSAS TPADKQLVAA SNGNGNGNPL AVRKAPSKDR HSKVDGRGRR IRMPIICAAR 60 VFQLTRELGH KSDGQTIEWL LRQAEPSIIA ATGTGTTPAS FSTSSPSSLR SSSSSTAGVH 120 PHAAPAQGFW ALPARADFGQ LWSFAAAPEM MVAAAAAAAP GMAGEASAAR VGNYLPVAQG 180 NLNLLASFSG GPAPTAAAGR AEEETAR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.124672 | 0.0 | sheath |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G445944 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00524 | DAP | Transfer from AT5G23280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G445944_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU972127 | 0.0 | EU972127.1 Zea mays clone 375636 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001144989.1 | 1e-146 | uncharacterized LOC100278144 | ||||
Swissprot | Q9FMX2 | 3e-65 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A3L6EWE1 | 1e-145 | A0A3L6EWE1_MAIZE; Transcription factor TCP21 | ||||
TrEMBL | B6U4G2 | 1e-145 | B6U4G2_MAIZE; TCP transcription factor | ||||
STRING | GRMZM2G445944_P01 | 1e-146 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1941 | 33 | 100 | Representative plant | OGRP8514 | 10 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08330.1 | 4e-33 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G445944_P01 |
Entrez Gene | 100278144 |
Publications ? help Back to Top | |||
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