PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G445684_P01
Common NameLOC103641945
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 423aa    MW: 45639.1 Da    PI: 6.292
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G445684_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-05242261120
                        EEETTTTEEESSHHHHHHHH CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                        ++Cp C k+F+r  n++ H+
  GRMZM2G445684_P01 242 FSCPVCYKTFNRYNNMQMHM 261
                        89*****************9 PP

2zf-C2H212.50.00044328348323
                        ETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                        C +Cgk F  k + ++H +++
  GRMZM2G445684_P01 328 CRKCGKAFAVKGDWRTHEKNC 348
                        *****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.86E-5238264No hitNo description
SMARTSM003550.45242264IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.6E-6242261IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.743242269IPR007087Zinc finger, C2H2
PROSITE patternPS000280244264IPR007087Zinc finger, C2H2
SuperFamilySSF576673.58E-6310346No hitNo description
Gene3DG3DSA:3.30.160.603.0E-5313346IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035582326346IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.621326346IPR007087Zinc finger, C2H2
SMARTSM00355220352375IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MEDPYTSFFK NSYYYYASSY PAAPAPHRLP PPIPPYTTLY PAAAPQYHHP ACFFQPPAPT  60
LPPPLNDSPP SPPLREALPL LSQSPTRAAS RARPHPHVAV DSDSDDDADD FLLREAAVGS  120
SVTPSASTRA PLFADLNRVP SCCDDDGGGD PMDLEPAVAL RIGLPPAPAN GCGAPEADLL  180
SGLSGRAGCG GMEAEEDEDE CKVGDGDEVV PLGFASTPIG SLNKGQYWIP TPAQILIGPT  240
QFSCPVCYKT FNRYNNMQMH MWGHGSQYRK GPESLRGVQP TAMLRLPCYC CAPGCRNNID  300
HPRARPLKDF RTLQTHYKRK HGLKPFLCRK CGKAFAVKGD WRTHEKNCGR LWYCLCGSEF  360
KHKRSLKDHA RAFGHGHGAF GCNNLDGDGD GDGGAGGGAN GLDDDDDDGA VSEIEHDYCA  420
AAR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.396250.0tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G445684
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G445684_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0969070.0FP096907.1 Phyllostachys edulis cDNA clone: bphylf041f10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008663470.10.0zinc finger protein WIP2
TrEMBLA0A1D6KIK80.0A0A1D6KIK8_MAIZE; Zinc finger protein WIP2
STRINGGRMZM2G445684_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-108C2H2 family protein