PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G445684_P01 | ||||||||
Common Name | LOC103641945 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C2H2 | ||||||||
Protein Properties | Length: 423aa MW: 45639.1 Da PI: 6.292 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.2 | 2.9e-05 | 242 | 261 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ GRMZM2G445684_P01 242 FSCPVCYKTFNRYNNMQMHM 261 89*****************9 PP | |||||||
2 | zf-C2H2 | 12.5 | 0.00044 | 328 | 348 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C +Cgk F k + ++H +++ GRMZM2G445684_P01 328 CRKCGKAFAVKGDWRTHEKNC 348 *****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.86E-5 | 238 | 264 | No hit | No description |
SMART | SM00355 | 0.45 | 242 | 264 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 7.6E-6 | 242 | 261 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.743 | 242 | 269 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 244 | 264 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.58E-6 | 310 | 346 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.0E-5 | 313 | 346 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 82 | 326 | 346 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.621 | 326 | 346 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 220 | 352 | 375 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MEDPYTSFFK NSYYYYASSY PAAPAPHRLP PPIPPYTTLY PAAAPQYHHP ACFFQPPAPT 60 LPPPLNDSPP SPPLREALPL LSQSPTRAAS RARPHPHVAV DSDSDDDADD FLLREAAVGS 120 SVTPSASTRA PLFADLNRVP SCCDDDGGGD PMDLEPAVAL RIGLPPAPAN GCGAPEADLL 180 SGLSGRAGCG GMEAEEDEDE CKVGDGDEVV PLGFASTPIG SLNKGQYWIP TPAQILIGPT 240 QFSCPVCYKT FNRYNNMQMH MWGHGSQYRK GPESLRGVQP TAMLRLPCYC CAPGCRNNID 300 HPRARPLKDF RTLQTHYKRK HGLKPFLCRK CGKAFAVKGD WRTHEKNCGR LWYCLCGSEF 360 KHKRSLKDHA RAFGHGHGAF GCNNLDGDGD GDGGAGGGAN GLDDDDDDGA VSEIEHDYCA 420 AAR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.39625 | 0.0 | tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G445684 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G445684_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP096907 | 0.0 | FP096907.1 Phyllostachys edulis cDNA clone: bphylf041f10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008663470.1 | 0.0 | zinc finger protein WIP2 | ||||
TrEMBL | A0A1D6KIK8 | 0.0 | A0A1D6KIK8_MAIZE; Zinc finger protein WIP2 | ||||
STRING | GRMZM2G445684_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP586 | 38 | 170 | Representative plant | OGRP410 | 15 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57670.1 | 1e-108 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G445684_P01 |
Entrez Gene | 103641945 |