PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G444748_P01 | ||||||||
Common Name | Zm.75219 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bZIP | ||||||||
Protein Properties | Length: 170aa MW: 17672.9 Da PI: 7.3905 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 36.2 | 1.4e-11 | 36 | 78 | 4 | 46 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 +r++r+ +NRe+ArrsR RK+ ++eL+ ++ L eN + GRMZM2G444748_P01 36 QRRAKRMLSNRESARRSRMRKQRHLDELTAQAAHLRRENAHVA 78 689************************************8665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.4E-14 | 33 | 97 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.726 | 35 | 77 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 6.6E-10 | 36 | 78 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 4.1E-9 | 37 | 107 | No hit | No description |
SuperFamily | SSF57959 | 3.09E-10 | 37 | 84 | No hit | No description |
CDD | cd14702 | 1.18E-15 | 38 | 86 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 40 | 55 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MASSSGSGSS GSLSAATAAL AAAAGTEEEL RALMEQRRAK RMLSNRESAR RSRMRKQRHL 60 DELTAQAAHL RRENAHVATA LGLTAQGLLA VDAENAVLRT QTAELAARLG SLNDILACMN 120 TNAVGAVAVS LTAAAAAAAS SDPCLAFDGA TALDDLLRSC PENMFQYQLC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 49 | 56 | RRSRMRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.75219 | 0.0 | cell lignification| ear| endosperm| meristem| pericarp| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G444748 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00239 | DAP | Transfer from AT1G75390 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G444748_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT067356 | 0.0 | BT067356.2 Zea mays full-length cDNA clone ZM_BFc0022C11 mRNA, complete cds. | |||
GenBank | BT085301 | 0.0 | BT085301.2 Zea mays full-length cDNA clone ZM_BFb0368K21 mRNA, complete cds. | |||
GenBank | BT085353 | 0.0 | BT085353.2 Zea mays full-length cDNA clone ZM_BFc0002B07 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001344080.1 | 1e-115 | uncharacterized protein LOC111274020 | ||||
TrEMBL | F1DK38 | 1e-114 | F1DK38_MAIZE; BZIP transcription factor (Fragment) | ||||
STRING | GRMZM2G444748_P01 | 1e-114 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4459 | 33 | 67 | Representative plant | OGRP551 | 16 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34590.1 | 7e-27 | G-box binding factor 6 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G444748_P01 |