PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G443202_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 677aa    MW: 74852.2 Da    PI: 6.9379
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G443202_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.16.4e-11517558245
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                        +rWT +E +ll+++++++  + W+ Ia ++  +++  qc++++ 
  GRMZM2G443202_P01 517 DRWTNQETLLLLKGIEKFNDN-WNHIAGHVR-TKSKAQCIHHFI 558
                        69****************977.*********.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.720.102.1E-3860200IPR017849Alkaline phosphatase-like, alpha/beta/alpha
SuperFamilySSF536495.23E-6073365IPR017850Alkaline-phosphatase-like, core domain
PfamPF016637.5E-3681197IPR002591Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase
Gene3DG3DSA:3.40.720.102.1E-16203331IPR017849Alkaline phosphatase-like, alpha/beta/alpha
PfamPF016634.3E-29203362IPR002591Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase
PROSITE profilePS5030515.275320677IPR026590Sirtuin family, catalytic core domain
SuperFamilySSF524673.22E-20362460IPR029035DHS-like NAD/FAD-binding domain
PfamPF021462.5E-15363439IPR003000Sirtuin family
Gene3DG3DSA:3.40.50.12205.4E-14366491IPR029035DHS-like NAD/FAD-binding domain
PROSITE profilePS5129319.76514565IPR017884SANT domain
SMARTSM007178.6E-10515563IPR001005SANT/Myb domain
SuperFamilySSF466893.66E-11516571IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.9E-7517557IPR009057Homeodomain-like
CDDcd001671.53E-8518560No hitNo description
PfamPF002493.4E-10518559IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
GO:0070403Molecular FunctionNAD+ binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MASPPHSFEV RTPGDSPRPT AALLSPSVAA PQPSTASRLL LLLTAAVAAA TAFVLLHLPT  60
TVVTAASATA RPLSKLSKPV VLLISSDGVR FGYQYKAPLL HIRHLFANGT SAAEGLVPVF  120
PTLTFPNHYS IVTDLYPSSH GIINNYFPDP ISGDYFTMKN HDPKWWLVEP LWATAAAQGV  180
LSATFFWPGS EVTKGSWNFP DKGHQVGPDD PSITDAVVHI DEMLGRLIAG LEARGMFEDV  240
NIILVGDHGM VGTCDRKLVF LEELAPWIEL KSDWVLSMTP LLAIRPPDGV SPDEVVAKMN  300
EGLGSGKVKN GEYLKMYLKE ELPTCLHYSE SYRIPPIIGL IGEGYKIEMK RSKRNECGGA  360
HGRAQPNAAH YALASLERIG RVHSMVTQNV DRMHHRAGGN PFELHGSVYE VICLECGTSI  420
SRESFQEEVK NLNPKEGYQY TTHSVEDSEI ILACGSSLSS AKWRSPLSIN KVAINNVANL  480
QRMKTDCFHN AKFVTGHSSL DFQRVDAMKD GLDTDGDRWT NQETLLLLKG IEKFNDNWNH  540
IAGHVRTKSK AQCIHHFIRL PVADGLLENI EVPEASLPSG MQSSGFLHSD SNVHHKQRVN  600
VRYTTTSDEA TTPQEGDGVL TLIYYDMDLR ECTWGIVDVK INRQQSSKGK PLSKKQREWR  660
LQTAFESLKL VRLYSEC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4b56_A5e-3574362101432ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE FAMILY MEMBER 1
4b56_B5e-3574362101432ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE FAMILY MEMBER 1
4gtw_A4e-3574362105436Ectonucleotide pyrophosphatase/phosphodiesterase family member 2, Alkaline phosphodiesterase I
4gtw_B4e-3574362105436Ectonucleotide pyrophosphatase/phosphodiesterase family member 2, Alkaline phosphodiesterase I
4gtx_A4e-3574362105436Ectonucleotide pyrophosphatase/phosphodiesterase family member 2, Alkaline phosphodiesterase I
4gtx_B4e-3574362105436Ectonucleotide pyrophosphatase/phosphodiesterase family member 2, Alkaline phosphodiesterase I
4gty_A4e-3574362105436Ectonucleotide pyrophosphatase/phosphodiesterase family member 2, Alkaline phosphodiesterase I
4gty_B4e-3574362105436Ectonucleotide pyrophosphatase/phosphodiesterase family member 2, Alkaline phosphodiesterase I
4gtz_A4e-3574362105436Ectonucleotide pyrophosphatase/phosphodiesterase family member 2, Alkaline phosphodiesterase I
4gtz_B4e-3574362105436Ectonucleotide pyrophosphatase/phosphodiesterase family member 2, Alkaline phosphodiesterase I
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.45580.0ear| endosperm| meristem| ovary| sheath| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G443202
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G443202_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9518600.0EU951860.1 Zea mays clone 1061683 ectonucleotide pyrophosphatase/phosphodiesterase 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146857.10.0uncharacterized LOC100280465
TrEMBLA0A1D6NKR90.0A0A1D6NKR9_MAIZE; Alkaline-phosphatase-like family protein
STRINGGRMZM2G443202_P010.0(Zea mays)