PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G440529_P01 | ||||||||
Common Name | LOC100277655 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 385aa MW: 40876.5 Da PI: 6.4339 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.1 | 1e-05 | 275 | 312 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L GRMZM2G440529_P01 275 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 312 677888999*******998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.731 | 263 | 312 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.03E-6 | 273 | 317 | No hit | No description |
SuperFamily | SSF47459 | 2.62E-11 | 273 | 326 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0061 | 274 | 318 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.8E-9 | 277 | 320 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042631 | Biological Process | cellular response to water deprivation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071215 | Biological Process | cellular response to abscisic acid stimulus | ||||
GO:0071472 | Biological Process | cellular response to salt stress | ||||
GO:2000214 | Biological Process | regulation of proline metabolic process | ||||
GO:2000377 | Biological Process | regulation of reactive oxygen species metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MAEQWWGSAS HRSHGTSACS AAAPPPLTVT GRVACGSTFP TAAVESTSSV TFQDPYRNST 60 HQPLSDAASS LGDPHLDWTQ TFLSGRSDAS FQAVLQEPSA TNDPLIRDHM DMGAGFLADQ 120 AQLAPSPYGG TEPSQAQALF DATAAVHNIL MYGDSESSVS YDAAAASMQF SQLLRTSVPA 180 STPTQGDGVA VGAPMQYLSG SSYLPFGGPL PSHLLLQALQ AAKPNSRSSN ANSPTAKDDC 240 SPPPAATRKS VSEPPAAAKR PRIEAPSPLP TFKVRKEKLG DRITALQQLV SPFGKTDTAS 300 VLHEAIEYIK FLHDQVASLS SPYLKNGIPM KQFQHKGSED SKDNGDTKQD LRSRGLCLVP 360 VASTYTVAAE TPEFWHPTFG GTFRW |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.32830 | 0.0 | cell culture |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G440529 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G440529_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU969801 | 0.0 | EU969801.1 Zea mays clone 335797 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020405227.1 | 0.0 | uncharacterized LOC100277655 isoform X1 | ||||
TrEMBL | A0A1D6N9Q6 | 0.0 | A0A1D6N9Q6_MAIZE; Transcription factor bHLH112 | ||||
STRING | GRMZM2G440529_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2970 | 34 | 64 | Representative plant | OGRP3135 | 11 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61660.3 | 6e-48 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G440529_P01 |