PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G440219_P01
Common NameANAC076, LOC103638190, ZEAMMB73_147023, ZEAMMB73_344593, Zm.124311
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 349aa    MW: 40215.9 Da    PI: 6.9691
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G440219_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.73.3e-55201541129
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                        +ppGfrFhPtdeelv++yL+kkv++++++l +vik+vd+yk+ePwdL+ k       ++e++ewyfFs++dkky+tg+r+nrat++g+Wkat
  GRMZM2G440219_P01  20 VPPGFRFHPTDEELVDYYLRKKVASRRIDL-NVIKDVDLYKIEPWDLQdKcrlggPGEEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKAT 110
                        69****************************.99**************944655542334677****************************** PP

                NAM  87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                        g+dk+++++ +++lvg++ktLv+ykgrap+g+k+dW+mheyrle
  GRMZM2G440219_P01 111 GRDKPIYANkQRQLVGMRKTLVYYKGRAPNGHKSDWIMHEYRLE 154
                        *******9856777****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.19E-6015174IPR003441NAC domain
PROSITE profilePS5100560.34120174IPR003441NAC domain
PfamPF023651.4E-2821153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009054anatomyinflorescence bract
PO:0020136anatomyear inflorescence
PO:0007001developmental stageearly whole plant fruit ripening stage
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MGMSSTQAAA QTQQQQQQLV PPGFRFHPTD EELVDYYLRK KVASRRIDLN VIKDVDLYKI  60
EPWDLQDKCR LGGPGEEEQN EWYFFSHKDK KYPTGTRTNR ATAAGFWKAT GRDKPIYANK  120
QRQLVGMRKT LVYYKGRAPN GHKSDWIMHE YRLETNENGP PQEEGWVVCR VFKKRLPTTR  180
RESDHDAPCW YVDEDGTFMH DLNSPMGGLP PHHSIAQLHE QHLQMLNNSY KRRELKLQFQ  240
MPSHHILNAA AAIPHELEPP SFHSLLVSPD HHQAAKAHHR AVQLMDEHAA DQVTDWRVLD  300
KFVASQLSHD DAAKGVDYTD EGDILQINEK QATEYASTST SSSQVDPWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-50111758166NO APICAL MERISTEM PROTEIN
1ut4_B2e-50111758166NO APICAL MERISTEM PROTEIN
1ut7_A2e-50111758166NO APICAL MERISTEM PROTEIN
1ut7_B2e-50111758166NO APICAL MERISTEM PROTEIN
3swm_A2e-5011757169NAC domain-containing protein 19
3swm_B2e-5011757169NAC domain-containing protein 19
3swm_C2e-5011757169NAC domain-containing protein 19
3swm_D2e-5011757169NAC domain-containing protein 19
3swp_A2e-5011757169NAC domain-containing protein 19
3swp_B2e-5011757169NAC domain-containing protein 19
3swp_C2e-5011757169NAC domain-containing protein 19
3swp_D2e-5011757169NAC domain-containing protein 19
4dul_A2e-50111758166NAC domain-containing protein 19
4dul_B2e-50111758166NAC domain-containing protein 19
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G440219
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Up-regulated during xylem vessel element formation. Expressed preferentially in procambial cells adjacent to root meristem. {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
UniprotTISSUE SPECIFICITY: Detected in root vessels of protoxylems, outermost metaxylems, inner metaxylems, shoots and hypocotyls. Expressed in roots, hypocotyls, cotyledons and leaves (PubMed:18445131). Expressed in developing xylems (PubMed:16103214, PubMed:17565617). Specifically expressed in vessels in the secondary xylem of the root-hypocotyl region, and in vessels but not in interfascicular fibers in stems (PubMed:25148240). {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:17565617, ECO:0000269|PubMed:18445131, ECO:0000269|PubMed:25148240}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G440219_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9569700.0EU956970.1 Zea mays clone 1579097 ANAC076 mRNA, complete cds.
GenBankJN6340830.0JN634083.1 Zea mays secondary wall NAC transcription factor 7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147909.10.0uncharacterized LOC100281519
RefseqXP_008658571.10.0secondary wall NAC transcription factor 7 isoform X1
SwissprotF4HYV51e-104NAC26_ARATH; NAC domain-containing protein 26
TrEMBLB6SW550.0B6SW55_MAIZE; ANAC076
STRINGGRMZM2G041668_P010.0(Zea mays)
STRINGGRMZM2G440219_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121023039
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62700.12e-95Arabidopsis NAC domain containing protein 26
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  3. Zhong R, et al.
    Transcriptional activation of secondary wall biosynthesis by rice and maize NAC and MYB transcription factors.
    Plant Cell Physiol., 2011. 52(10): p. 1856-71
    [PMID:21908441]