PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G439903_P01 | ||||||||
Common Name | LOC103654359, ZEAMMB73_437856 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NAC | ||||||||
Protein Properties | Length: 309aa MW: 33841.8 Da PI: 6.8422 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 131.5 | 6.3e-41 | 16 | 149 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvka...eekewyfFskrdkkyatgkrknratksgyWkat 86 l+pGfrF Pt+eel+++yL+++++g+k +e+ i+ +diy ++P++L++ + a ++++w+fF++r++++ +g r+ r+t sgyWkat GRMZM2G439903_P01 16 LAPGFRFYPTEEELLTFYLRHRLAGTKPVVEHLIPVMDIYGYHPSELQAmagA--AnvcDTEQWFFFCPRAERELHGGRPARTTPSGYWKAT 105 579************************999888**************953442..1344677****************************** PP NAM 87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 g+ v+s+ +++++g k+t+vfy+grap+g++t+W m+ey++ GRMZM2G439903_P01 106 GSPSYVYSSspNNRVIGEKRTMVFYQGRAPTGNRTRWKMNEYKA 149 ********9889999***************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.1E-46 | 14 | 175 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 47.576 | 16 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.4E-22 | 18 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MMESSGGSGS SDPLLLAPGF RFYPTEEELL TFYLRHRLAG TKPVVEHLIP VMDIYGYHPS 60 ELQAMAGAAN VCDTEQWFFF CPRAERELHG GRPARTTPSG YWKATGSPSY VYSSSPNNRV 120 IGEKRTMVFY QGRAPTGNRT RWKMNEYKAV ADDAPPAPGA PVMLRNDFSV CRVYISTGTL 180 RSFDRRPLNR PGGLAVVSAH QQAVHCGYQQ QQLQPQLPPP AAVAKTTTRH HHQQMHAAVV 240 VDDDAADSNG RHAAAAENSH DSSSSGSRGG VDGAEDAAMA IDWDSLIPPV DDLAFRGVDD 300 LTRVIWPHN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-29 | 7 | 174 | 5 | 163 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-29 | 7 | 174 | 5 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-29 | 7 | 174 | 5 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-29 | 7 | 174 | 5 | 163 | NO APICAL MERISTEM PROTEIN |
4dul_A | 9e-29 | 7 | 174 | 5 | 163 | NAC domain-containing protein 19 |
4dul_B | 9e-29 | 7 | 174 | 5 | 163 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G439903 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G439903_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020407877.1 | 1e-175 | uncharacterized protein LOC103654359 | ||||
Swissprot | Q9FMR3 | 7e-63 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A3L6F907 | 0.0 | A0A3L6F907_MAIZE; NAC domain-containing protein 90 | ||||
STRING | GRMZM2G439903_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 | Representative plant | OGRP2278 | 11 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44350.2 | 1e-56 | NAC domain containing protein 61 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G439903_P01 |
Entrez Gene | 103654359 |
Publications ? help Back to Top | |||
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