PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G438293_P01 | ||||||||
Common Name | ZEAMMB73_594588, Zm.92530 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bZIP | ||||||||
Protein Properties | Length: 238aa MW: 24922 Da PI: 5.5233 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 41.5 | 3e-13 | 179 | 223 | 3 | 47 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 +++re+r++kNRe+A rsR+RK+a+i+eLe v L +e +L GRMZM2G438293_P01 179 AIQREKRMIKNRESAARSRERKQAYIAELEYMVTRLAEEKAELLR 223 789************************************987764 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.9E-5 | 177 | 238 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.818 | 179 | 227 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 3.0E-11 | 179 | 224 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 3.76E-20 | 181 | 228 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 8.8E-12 | 182 | 226 | No hit | No description |
SuperFamily | SSF57959 | 1.55E-9 | 182 | 227 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 184 | 199 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MASSRVIPSS SPSHTASDLA RLAQAASRPG GGGSGPGSMN VEELLRGIYS DMPTPAPPAS 60 EPGRPMPPAP APVSATRKTA EEVWKEITGG GGSGEAVAPV AAQAVAPDGG AGTGGPEVTL 120 EDFLARESAV KEDEVKISVP PAPVMGLPGG AEGVSVPGGG GGRERKRQLV STVDRARSAI 180 QREKRMIKNR ESAARSRERK QAYIAELEYM VTRLAEEKAE LLRQQEEQFQ TRLEEVTF |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.92530 | 0.0 | ear| meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G438293 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the ABA-responsive elements (ABREs) in vitro. Involved in abiotic stress responses and abscisic acid (ABA) signaling (PubMed:20039193). Involved in the signaling pathway that induces growth inhibition in response to D-allose (PubMed:23397192). {ECO:0000269|PubMed:20039193, ECO:0000269|PubMed:23397192}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G438293_P01 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by anoxia, drought, salt stress, oxidative stress, cold and abscisic acid (ABA) (PubMed:20039193). Induced by D-allose (PubMed:23397192). {ECO:0000269|PubMed:20039193, ECO:0000269|PubMed:23397192}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU972226 | 0.0 | EU972226.1 Zea mays clone 378047 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008657022.1 | 1e-163 | bZIP transcription factor 46 isoform X1 | ||||
Swissprot | Q0JHF1 | 2e-64 | BZP12_ORYSJ; bZIP transcription factor 12 | ||||
TrEMBL | A0A3L6DQY8 | 1e-164 | A0A3L6DQY8_MAIZE; G-box-binding factor 4 | ||||
STRING | GRMZM2G438293_P01 | 1e-165 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2665 | 37 | 86 | Representative plant | OGRP9845 | 4 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03970.1 | 2e-14 | G-box binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G438293_P01 |
Publications ? help Back to Top | |||
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